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Contents of README:SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM aims to be a format that: - Is flexible enough to store all the alignment information generated by various alignment programs - Is simple enough to be easily generated by alignment programs or converted from existing alignment formats - Is compact in file size - Allows most of operations on the alignment to work on a stream without loading the whole alignment into memory - Allows the file to be indexed by genomic position to efficiently retrieve all reads aligning to a locus. SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. Publication: Li H.*, Handsaker B.*, Wysoker A., Fennell T., Ruan J., Homer N., Marth G., Abecasis G., Durbin R. and 1000 Genome Project Data Processing Subgroup (2009) The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-9. [PMID: 19505943] |
Name Last modified Size
Parent Directory - README 14-Dec-2013 18:05 1.0K References 14-Dec-2013 18:05 267 samtools.SlackBuild 14-Dec-2013 18:05 4.3K samtools.info 14-Dec-2013 18:05 322 slack-desc 14-Dec-2013 18:05 1.0K
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