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Welcome to ftp.nluug.nl Current directory: /ftp/pub/os/Linux/distr/salix/sbo/14.1/academic/staden/ |
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Contents of README:The programs part of the Staden package provide an excellent and fully developed set of DNA sequence assembly, editing, analysis and more. Some of its features include: GAP4 - Performs assembly, contig joining, assembly checking, repeat search, experiment suggestion, read pair analysis and contig editing. GAP5 - The new development version of Gap4, designed to work with the large volumes of data attainable through the newer sequencing technologies. PREGAP4 - Provides a graphical user interface to set up the processing required to prepare trace data for assembly or analysis. SPIN - Compares pairs of sequences in many ways, often presenting its results graphically and has a sliding sequence window linked to the plots. TREV - A rapid and flexible viewer and editor for ABI, ALF or SCF trace files. For more information and citing, visit Staden's web page and check the "References" file in the documentation. |
Name Last modified Size
Parent Directory -
desktop/ 30-Mar-2023 12:15 -
README 30-Jan-2014 06:31 1.0K
References 23-Dec-2011 00:00 9.1K
doinst.sh 26-Nov-2013 10:57 129
slack-desc 26-Nov-2013 10:57 811
staden.SlackBuild 07-Feb-2015 09:27 3.4K
staden.info 30-Jan-2014 06:31 341
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