*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files debian/files* core debian/substvars debian/files
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building r-base using existing ./r-base_4.4.1.orig.tar.gz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building r-base in r-base_4.4.1-1~bustercran.0.debian.tar.xz
dpkg-source: info: building r-base in r-base_4.4.1-1~bustercran.0.dsc
I: Generating source changes file for original dsc
dpkg-genchanges: warning: the current version (4.4.1-1~bustercran.0) is earlier than the previous one (4.4.1-1)
dpkg-genchanges: info: including full source code in upload
I: pbuilder: network access will be disabled during build
I: Current time: Fri Jun 14 14:09:01 CEST 2024
I: pbuilder-time-stamp: 1718366941
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/buster-i386-base.tgz]
I: copying local configuration
I: Installing apt-lines
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Obtaining the cached apt archive contents
I: Copying source file
I: copying [../r-base_4.4.1-1~bustercran.0.dsc]
I: copying [../r-base_4.4.1.orig.tar.gz]
I: copying [../r-base_4.4.1-1~bustercran.0.debian.tar.xz]
I: Extracting source
dpkg-source: warning: extracting unsigned source package (r-base_4.4.1-1~bustercran.0.dsc)
dpkg-source: info: extracting r-base in r-base-4.4.1
dpkg-source: info: unpacking r-base_4.4.1.orig.tar.gz
dpkg-source: info: unpacking r-base_4.4.1-1~bustercran.0.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying set_R_LIBS_USER_and_SITE_in_Renviron.patch
I: using fakeroot in build.
I: Installing the build-deps
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses-dev, libreadline-dev, debhelper-compat (= 12), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion, libtirpc-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 12170 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on gfortran (>= 4:4.9.2-2); however:
  Package gfortran is not installed.
 pbuilder-satisfydepends-dummy depends on libblas-dev; however:
  Package libblas-dev is not installed.
 pbuilder-satisfydepends-dummy depends on liblapack-dev; however:
  Package liblapack-dev is not installed.
 pbuilder-satisfydepends-dummy depends on tcl8.6-dev; however:
  Package tcl8.6-dev is not installed.
 pbuilder-satisfydepends-dummy depends on tk8.6-dev; however:
  Package tk8.6-dev is not installed.
 pbuilder-satisfydepends-dummy depends on bison; however:
  Package bison is not installed.
 pbuilder-satisfydepends-dummy depends on groff-base; however:
  Package groff-base is not installed.
 pbuilder-satisfydepends-dummy depends on libncurses-dev; however:
  Package libncurses-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libreadline-dev; however:
  Package libreadline-dev is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on texinfo; however:
  Package texinfo is not installed.
 pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
  Package libbz2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on liblzma-dev; however:
  Package liblzma-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpcre2-dev; however:
  Package libpcre2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libcurl4-openssl-dev | libcurl4-dev; however:
  Package libcurl4-openssl-dev is not installed.
  Package libcurl4-dev is not installed.
 pbuilder-satisfydepends-dummy depends on xdg-utils; however:
  Package xdg-utils is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpng-dev; however:
  Package libpng-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libjpeg-dev; however:
  Package libjpeg-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libx11-dev; however:
  Package libx11-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libxt-dev; however:
  Package libxt-dev is not installed.
 pbuilder-satisfydepends-dummy depends on x11proto-core-dev; however:
  Package x11proto-core-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libpango1.0-dev; however:
  Package libpango1.0-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libcairo2-dev; however:
  Package libcairo2-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libtiff-dev; however:
  Package libtiff-dev is not installed.
 pbuilder-satisfydepends-dummy depends on xvfb; however:
  Package xvfb is not installed.
 pbuilder-satisfydepends-dummy depends on xauth; however:
  Package xauth is not installed.
 pbuilder-satisfydepends-dummy depends on xfonts-base; however:
  Package xfonts-base is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-base; however:
  Package texlive-base is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-base; however:
  Package texlive-latex-base is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however:
  Package texlive-plain-generic is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however:
  Package texlive-fonts-recommended is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-fonts-extra; however:
  Package texlive-fonts-extra is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-extra-utils; however:
  Package texlive-extra-utils is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however:
  Package texlive-latex-recommended is not installed.
 pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however:
  Package texlive-latex-extra is not installed.
 pbuilder-satisfydepends-dummy depends on default-jdk | openjdk-10-jdk; however:
  Package default-jdk is not installed.
  Package openjdk-10-jdk is not installed.
 pbuilder-satisfydepends-dummy depends on mpack; however:
  Package mpack is not installed.
 pbuilder-satisfydepends-dummy depends on bash-completion; however:
  Package bash-completion is not installed.
 pbuilder-satisfydepends-dummy depends on libtirpc-dev; however:
  Package libtirpc-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} bison{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} gir1.2-freedesktop{a} gir1.2-glib-2.0{a} gir1.2-harfbuzz-0.0{a} gir1.2-pango-1.0{a} groff-base{a} icu-devtools{a} intltool-debian{a} java-common{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbison-dev{a} libblas-dev{a} libblas3{a} libblkid-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcroco3{a} libcups2{a} libcupsimage2{a} libcurl4{a} libcurl4-openssl-dev{a} libdatrie1{a} libdbus-1-3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontconfig1-dev{a} libfontenc1{a} libfreetype6{a} libfreetype6-dev{a} libfribidi-dev{a} libfribidi0{a} libgfortran-8-dev{a} libgfortran5{a} libgif7{a} libgirepository-1.0-1{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgraphite2-dev{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libharfbuzz-dev{a} libharfbuzz-gobject0{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libice-dev{a} libice6{a} libicu-dev{a} libicu63{a} libidn11{a} libijs-0.35{a} libjbig-dev{a} libjbig0{a} libjbig2dec0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libllvm7{a} liblzma-dev{a} liblzo2-2{a} libmagic-mgc{a} libmagic1{a} libmime-charset-perl{a} libmount-dev{a} libmpdec2{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnspr4{a} libnss3{a} libopenjp2-7{a} libpango-1.0-0{a} libpango1.0-dev{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpangoxft-1.0-0{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-8-0{a} libpcre2-dev{a} libpcre2-posix0{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpng-dev{a} libpng16-16{a} libpotrace0{a} libpsl5{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline-dev{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libselinux1-dev{a} libsensors-config{a} libsensors5{a} libsepol1-dev{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libsombok3{a} libssh2-1{a} libssl1.1{a} libsynctex2{a} libtcl8.6{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtexluajit2{a} libtext-unidecode-perl{a} libthai-data{a} libthai0{a} libtiff-dev{a} libtiff5{a} libtiffxx5{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3{a} libtk8.6{a} libtool{a} libuchardet0{a} libunicode-linebreak-perl{a} libunwind8{a} libwebp6{a} libwoff1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb-sync1{a} libxcb1{a} libxcb1-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft-dev{a} libxft2{a} libxi6{a} libxkbfile1{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxss-dev{a} libxss1{a} libxt-dev{a} libxt6{a} libxtst6{a} libxxf86vm1{a} libxxhash0{a} libzzip-0-13{a} lsb-base{a} m4{a} man-db{a} mime-support{a} mpack{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} pango1.0-tools{a} pkg-config{a} po-debconf{a} poppler-data{a} preview-latex-style{a} python{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tcl8.6{a} tcl8.6-dev{a} tex-common{a} texinfo{a} texlive-base{a} texlive-binaries{a} texlive-extra-utils{a} texlive-fonts-extra{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} tk8.6{a} tk8.6-dev{a} ucf{a} uuid-dev{a} x11-common{a} x11-xkb-utils{a} x11proto-core-dev{a} x11proto-dev{a} x11proto-scrnsaver-dev{a} x11proto-xext-dev{a} xauth{a} xdg-utils{a} xfonts-base{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xorg-sgml-doctools{a} xserver-common{a} xtrans-dev{a} xvfb{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc curl dbus deepin-terminal eterm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-junicode fonts-lato fonts-linuxlibertine fonts-lobstertwo fonts-noto-hinted fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-roboto-unhinted fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix ghostscript gnome-terminal kitty konsole krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libcupsfilters1 libfile-homedir-perl libfile-mimeinfo-perl libgpm2 liblog-log4perl-perl libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libwww-perl libx11-protocol-perl libxml-sax-expat-perl libyaml-tiny-perl lilyterm lmodern lxterminal lynx mate-terminal mlterm mlterm-tiny pterm publicsuffix qterminal ruby rxvt-unicode sakura shared-mime-info stterm terminator terminology termit tex-gyre texlive-fonts-extra-links tilix tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs xfce4-terminal xiterm+thai xterm 
0 packages upgraded, 321 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/1033 MB of archives. After unpacking 2605 MB will be used.
Writing extended state information...
debconf: delaying package configuration, since apt-utils is not installed
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
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Setting up libpcsclite1:i386 (1.8.24-1) ...
Setting up libsensors5:i386 (1:3.5.0-3) ...
Setting up libpcre2-8-0:i386 (10.32-5) ...
Setting up libk5crypto3:i386 (1.17-3+deb10u4) ...
Setting up libglapi-mesa:i386 (18.3.6-2+deb10u1) ...
Setting up libkpathsea6:i386 (2018.20181218.49446-1) ...
Setting up libsasl2-2:i386 (2.1.27+dfsg-1+deb10u2) ...
Setting up libgfortran5:i386 (8.3.0-6) ...
Setting up liblzma-dev:i386 (5.2.4-1+deb10u1) ...
Setting up libgif7:i386 (5.1.4-3) ...
Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-1+deb10u1) ...
Setting up sensible-utils (0.0.12) ...
Setting up libxshmfence1:i386 (1.3-1) ...
Setting up libmime-charset-perl (1.012.2-1) ...
Setting up libxxhash0:i386 (0.6.5-2) ...
Setting up libuchardet0:i386 (0.0.6-3) ...
Setting up libasound2:i386 (1.1.8-1) ...
Setting up fonts-lmodern (2.004.5-6) ...
Setting up libopenjp2-7:i386 (2.3.0-2+deb10u2) ...
Setting up libthai-data (0.1.28-2) ...
Setting up libgirepository-1.0-1:i386 (1.58.3-2) ...
Setting up libssh2-1:i386 (1.8.0-2.1) ...
Setting up xorg-sgml-doctools (1:1.11-1) ...
Setting up libkrb5-3:i386 (1.17-3+deb10u4) ...
Setting up libtiff5:i386 (4.1.0+git191117-2~deb10u4) ...
Setting up libmpdec2:i386 (2.4.2-2) ...
Setting up libtext-unidecode-perl (1.30-1) ...
Setting up openssl (1.1.1n-0+deb10u3) ...
Setting up libbsd0:i386 (0.9.1-2+deb10u1) ...
Setting up libdrm-common (2.4.97-1) ...
Setting up libelf1:i386 (0.176-1.1) ...
Setting up readline-common (7.0-5) ...
Setting up libxml2:i386 (2.9.4+dfsg1-7+deb10u4) ...
Setting up xdg-utils (1.1.3-1+deb10u1) ...
Setting up libsynctex2:i386 (2018.20181218.49446-1) ...
Setting up libreadline7:i386 (7.0-5) ...
Setting up libtiffxx5:i386 (4.1.0+git191117-2~deb10u4) ...
Setting up libbz2-dev:i386 (1.0.6-9.2~deb10u1) ...
Setting up libpotrace0:i386 (1.15-1) ...
Setting up x11proto-dev (2018.4-4) ...
Setting up libfile-stripnondeterminism-perl (1.1.2-1) ...
Setting up libblkid-dev:i386 (2.33.1-0.1) ...
Setting up libgfortran-8-dev:i386 (8.3.0-6) ...
Setting up libice6:i386 (2:1.0.9-2) ...
Setting up libxdmcp6:i386 (1:1.1.2-3) ...
Setting up libpython3.7-stdlib:i386 (3.7.3-2+deb10u3) ...
Setting up tcl8.6 (8.6.9+dfsg-2) ...
Setting up libncurses-dev:i386 (6.1+20181013-2+deb10u2) ...
Setting up libxcb1:i386 (1.13.1-2) ...
Setting up libxau-dev:i386 (1:1.0.8-1+b2) ...
Setting up libwoff1:i386 (1.0.2-1) ...
Setting up libice-dev:i386 (2:1.0.9-2) ...
Setting up libtool (2.4.6-9) ...
Setting up libxcb-render0:i386 (1.13.1-2) ...
Setting up libpcre3-dev:i386 (2:8.39-12) ...
Setting up gfortran-8 (8.3.0-6) ...
Setting up libfribidi-dev:i386 (1.0.5-3.1+deb10u2) ...
Setting up libxcb-glx0:i386 (1.13.1-2) ...
Setting up tcl8.6-dev:i386 (8.6.9+dfsg-2) ...
Setting up libedit2:i386 (3.1-20181209-1) ...
Setting up libpng-dev:i386 (1.6.36-6) ...
Setting up libavahi-common3:i386 (0.7-4+deb10u1) ...
Setting up libjpeg-dev (1:1.5.2-2+deb10u1) ...
Setting up libjbig-dev:i386 (2.1-3.1+b2) ...
Setting up libglib2.0-bin (2.58.3-2+deb10u3) ...
Setting up libldap-2.4-2:i386 (2.4.47+dfsg-3+deb10u7) ...
Setting up m4 (1.4.18-2) ...
Setting up libnss3:i386 (2:3.42.1-1+deb10u5) ...
Setting up libxcb-shm0:i386 (1.13.1-2) ...
Setting up libreadline-dev:i386 (7.0-5) ...
Setting up gfortran (4:8.3.0-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libpython2.7-stdlib:i386 (2.7.16-2+deb10u1) ...
Setting up libxcb-present0:i386 (1.13.1-2) ...
Setting up libthai0:i386 (0.1.28-2) ...
Setting up ca-certificates (20200601~deb10u2) ...
Updating certificates in /etc/ssl/certs...
137 added, 0 removed; done.
Setting up libxdmcp-dev:i386 (1:1.1.2-3) ...
Setting up libblas3:i386 (3.8.0-2) ...
update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
Setting up libptexenc1:i386 (2018.20181218.49446-1) ...
Setting up libpcre2-posix0:i386 (10.32-5) ...
Setting up libfreetype6:i386 (2.9.1-3+deb10u3) ...
Setting up libtiff-dev:i386 (4.1.0+git191117-2~deb10u4) ...
Setting up libxcb-sync1:i386 (1.13.1-2) ...
Setting up x11proto-core-dev (2018.4-4) ...
Setting up bsdmainutils (11.1.2+b1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:i386 (1.17-3+deb10u4) ...
Setting up libcroco3:i386 (0.6.12-3) ...
Setting up icu-devtools (63.1-6+deb10u3) ...
Setting up ucf (3.0038+nmu1) ...
Setting up gir1.2-glib-2.0:i386 (1.58.3-2) ...
Setting up autoconf (2.69-11) ...
Setting up libxcb-dri2-0:i386 (1.13.1-2) ...
Setting up x11proto-xext-dev (2018.4-4) ...
Setting up libdrm2:i386 (2.4.97-1) ...
Setting up dwz (0.12-3) ...
Setting up groff-base (1.22.4-3+deb10u1) ...
Setting up bison (2:3.3.2.dfsg-1) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up libcurl4:i386 (7.64.0-4+deb10u2) ...
Setting up libllvm7:i386 (1:7.0.1-8+deb10u2) ...
Setting up libx11-6:i386 (2:1.6.7-1+deb10u2) ...
Setting up libharfbuzz0b:i386 (2.3.1-1) ...
Setting up libxkbfile1:i386 (1:1.0.9-2+b11) ...
Setting up x11proto-scrnsaver-dev (2018.4-4) ...
Setting up libsm6:i386 (2:1.2.3-1) ...
Setting up libxfont2:i386 (1:2.0.3-1) ...
Setting up libicu-dev:i386 (63.1-6+deb10u3) ...
Setting up libavahi-client3:i386 (0.7-4+deb10u1) ...
Setting up libmount-dev:i386 (2.33.1-0.1) ...
Setting up libxmuu1:i386 (2:1.1.2-2+b3) ...
Setting up libblas-dev:i386 (3.8.0-2) ...
update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode
Setting up libpython3-stdlib:i386 (3.7.3-1) ...
Setting up libdrm-amdgpu1:i386 (2.4.97-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libtirpc3:i386 (1.1.4-0.4) ...
Setting up libxcb-dri3-0:i386 (1.13.1-2) ...
Setting up libpaper1:i386 (1.1.28) ...

Creating config file /etc/papersize with new version
Setting up python3.7 (3.7.3-2+deb10u3) ...
Setting up liblapack3:i386 (3.8.0-2) ...
update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
Setting up libdrm-nouveau2:i386 (2.4.97-1) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libharfbuzz-icu0:i386 (2.3.1-1) ...
Setting up libxcb1-dev:i386 (1.13.1-2) ...
Setting up libxpm4:i386 (1:3.5.12-1) ...
Setting up libpcre2-dev:i386 (10.32-5) ...
Setting up python2.7 (2.7.16-2+deb10u1) ...
Setting up libxrender1:i386 (1:0.9.10-1) ...
Setting up libpython2-stdlib:i386 (2.7.16-1) ...
Setting up libsombok3:i386 (2.4.0-2) ...
Setting up libsm-dev:i386 (2:1.2.3-1) ...
Setting up libselinux1-dev:i386 (2.8-1+b1) ...
Setting up libdrm-radeon1:i386 (2.4.97-1) ...
Setting up fontconfig-config (2.13.1-2) ...
Setting up libdrm-intel1:i386 (2.4.97-1) ...
Setting up libgl1-mesa-dri:i386 (18.3.6-2+deb10u1) ...
Setting up libx11-dev:i386 (2:1.6.7-1+deb10u2) ...
Setting up libxext6:i386 (2:1.3.3-1+b2) ...
Setting up python3 (3.7.3-1) ...
Setting up libharfbuzz-gobject0:i386 (2.3.1-1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up xfonts-utils (1:7.7+6) ...
Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml-sax-perl (1.00+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up gir1.2-harfbuzz-0.0:i386 (2.3.1-1) ...
Setting up python2 (2.7.16-1) ...
Setting up libfreetype6-dev:i386 (2.9.1-3+deb10u3) ...
Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up tex-common (6.11) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up libxcb-shm0-dev:i386 (1.13.1-2) ...
Setting up libpython-stdlib:i386 (2.7.16-1) ...
Setting up xfonts-base (1:1.0.5) ...
Setting up libtirpc-dev:i386 (1.1.4-0.4) ...
Setting up libxfixes3:i386 (1:5.0.3-1) ...
Setting up libcurl4-openssl-dev:i386 (7.64.0-4+deb10u2) ...
Setting up libunicode-linebreak-perl (0.0.20190101-1) ...
Setting up liblapack-dev:i386 (3.8.0-2) ...
update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode
Setting up libxcb-render0-dev:i386 (1.13.1-2) ...
Setting up libxt6:i386 (1:1.1.5-1+b3) ...
Setting up libxext-dev:i386 (2:1.3.3-1+b2) ...
Setting up libxml-libxml-perl (2.0134+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libcups2:i386 (2.2.10-6+deb10u6) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libxss1:i386 (1:1.2.3-1) ...
Setting up libfontconfig1:i386 (2.13.1-2) ...
Setting up python3-lib2to3 (3.7.3-1) ...
Setting up python (2.7.16-1) ...
Setting up libxrender-dev:i386 (1:0.9.10-1) ...
Setting up python3-distutils (3.7.3-1) ...
Setting up libglib2.0-dev-bin (2.58.3-2+deb10u3) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up libxft2:i386 (2.3.2-2) ...
Setting up libxmu6:i386 (2:1.1.2-2+b3) ...
Setting up libfontconfig1-dev:i386 (2.13.1-2) ...
Setting up libxdamage1:i386 (1:1.1.4-3+b3) ...
Setting up libxi6:i386 (2:1.7.9-1) ...
Setting up libxtst6:i386 (2:1.2.3-1) ...
Setting up po-debconf (1.0.21) ...
Setting up preview-latex-style (11.91-2) ...
Setting up libtk8.6:i386 (8.6.9-2) ...
Setting up libpango-1.0-0:i386 (1.42.4-8~deb10u1) ...
Setting up libxaw7:i386 (2:1.0.13-1+b2) ...
Setting up libxss-dev:i386 (1:1.2.3-1) ...
Setting up libcairo2:i386 (1.16.0-4+deb10u1) ...
Setting up libcupsimage2:i386 (2.2.10-6+deb10u6) ...
Setting up libglib2.0-dev:i386 (2.58.3-2+deb10u3) ...
Setting up libxt-dev:i386 (1:1.1.5-1+b3) ...
Setting up texinfo (6.5.0.dfsg.1-4+b1) ...
Running mktexlsr. This may take some time. ... done.
Setting up libcairo-gobject2:i386 (1.16.0-4+deb10u1) ...
Setting up libpangoft2-1.0-0:i386 (1.42.4-8~deb10u1) ...
Setting up libpangocairo-1.0-0:i386 (1.42.4-8~deb10u1) ...
Setting up libxft-dev:i386 (2.3.2-2) ...
Setting up libcairo-script-interpreter2:i386 (1.16.0-4+deb10u1) ...
Setting up tk8.6 (8.6.9-2) ...
Setting up libharfbuzz-dev:i386 (2.3.1-1) ...
Setting up gir1.2-freedesktop:i386 (1.58.3-2) ...
Setting up libglx-mesa0:i386 (18.3.6-2+deb10u1) ...
Setting up libgs9:i386 (9.27~dfsg-2+deb10u5) ...
Setting up libpangoxft-1.0-0:i386 (1.42.4-8~deb10u1) ...
Setting up libglx0:i386 (1.1.0-1) ...
Setting up x11-xkb-utils (7.7+4) ...
Setting up pango1.0-tools (1.42.4-8~deb10u1) ...
Setting up gir1.2-pango-1.0:i386 (1.42.4-8~deb10u1) ...
Setting up libgl1:i386 (1.1.0-1) ...
Setting up tk8.6-dev:i386 (8.6.9-2) ...
Setting up texlive-binaries (2018.20181218.49446-1) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libcairo2-dev:i386 (1.16.0-4+deb10u1) ...
Setting up xserver-common (2:1.20.4-1+deb10u4) ...
Setting up texlive-base (2018.20190227-2) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
Setting up xvfb (2:1.20.4-1+deb10u4) ...
Setting up texlive-plain-generic (2018.20190227-2) ...
Setting up texlive-latex-base (2018.20190227-2) ...
Setting up texlive-extra-utils (2018.20190227-2) ...
Setting up texlive-fonts-extra (2018.20190227-2) ...
Setting up libpango1.0-dev:i386 (1.42.4-8~deb10u1) ...
Setting up texlive-latex-recommended (2018.20190227-2) ...
Setting up texlive-pictures (2018.20190227-2) ...
Setting up texlive-fonts-recommended (2018.20190227-2) ...
Setting up texlive-latex-extra (2018.20190227-2) ...
Setting up default-jre-headless (2:1.11-71) ...
Setting up openjdk-11-jre-headless:i386 (11.0.16+8-1~deb10u1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
OpenJDK Client VM warning: Ignoring option PermSize; support was removed in 8.0
Setting up debhelper (12.1.1) ...
Setting up openjdk-11-jre:i386 (11.0.16+8-1~deb10u1) ...
Setting up openjdk-11-jdk-headless:i386 (11.0.16+8-1~deb10u1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jre (2:1.11-71) ...
Setting up dh-autoreconf (19) ...
Setting up default-jdk-headless (2:1.11-71) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Setting up openjdk-11-jdk:i386 (11.0.16+8-1~deb10u1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up ca-certificates-java (20190405) ...
head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:GTS_Root_R2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Certigna.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Izenpe.com.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:EC-ACC.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:LuxTrust_Global_Root_2.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:GTS_Root_R4.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:emSign_Root_CA_-_G1.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SecureTrust_CA.pem
Adding debian:GTS_Root_R1.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
done.
Setting up default-jdk (2:1.11-71) ...
Processing triggers for libc-bin (2.28-10+deb10u1) ...
Processing triggers for ca-certificates (20200601~deb10u2) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...

done.
done.
Processing triggers for tex-common (6.11) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  libfakeroot
The following NEW packages will be installed:
  fakeroot libfakeroot
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/134 kB of archives.
After this operation, 369 kB of additional disk space will be used.
Selecting previously unselected package libfakeroot:i386.
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(Reading database ... 117621 files and directories currently installed.)
Preparing to unpack .../libfakeroot_1.23-1_i386.deb ...
Unpacking libfakeroot:i386 (1.23-1) ...
Selecting previously unselected package fakeroot.
Preparing to unpack .../fakeroot_1.23-1_i386.deb ...
Unpacking fakeroot (1.23-1) ...
Setting up libfakeroot:i386 (1.23-1) ...
Setting up fakeroot (1.23-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Processing triggers for man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libc-bin (2.28-10+deb10u1) ...
I: Copying back the cached apt archive contents
I: Building the package
I: Running cd /build/r-base-4.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc  -sa && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-genchanges -S '-sa' > ../r-base_4.4.1-1~bustercran.0_source.changes
dpkg-buildpackage: info: source package r-base
dpkg-buildpackage: info: source version 4.4.1-1~bustercran.0
dpkg-buildpackage: info: source distribution buster-cran
dpkg-buildpackage: info: source changed by Johannes Ranke <jranke@uni-bremen.de>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 fakeroot debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files debian/files* core debian/substvars debian/files
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 dpkg-source -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building r-base using existing ./r-base_4.4.1.orig.tar.gz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building r-base in r-base_4.4.1-1~bustercran.0.debian.tar.xz
dpkg-source: info: building r-base in r-base_4.4.1-1~bustercran.0.dsc
 debian/rules build
*** configure ***
#automake
#autoconf
dh_testdir
R_SHELL=/bin/bash				\
        mkdir_p="/bin/mkdir -p"                         \
MKDIR_P="/bin/mkdir -p"                         \
R_TEXI2DVICMD=emulation				\
R_PAPERSIZE=letter				\
R_BROWSER=xdg-open				\
R_BZIPCMD=/bin/bzip2				\
R_GZIPCMD="/bin/gzip -n"			\
PAGER=/usr/bin/pager				\
PERL=/usr/bin/perl				\
JAVA_HOME=/usr/lib/jvm/default-java             \
R_UNZIPCMD=/usr/bin/unzip			\
R_ZIPCMD=/usr/bin/zip				\
R_PRINTCMD=/usr/bin/lpr				\
TAR=/bin/tar					\
LIBnn=lib					\
AWK=/usr/bin/awk                                \
DD=/bin/dd					\
GREP=/bin/grep					\
FGREP="/bin/grep -F"				\
EGREP="/bin/grep -E"				\
SED=/bin/sed					\
GETWD="/bin/pwd"				\
CC=gcc					\
CXX=g++						\
F77=gfortran					\
FC=gfortran					\
CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"				\
CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"				\
FFLAGS="-g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong"				\
FCFLAGS="-g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong"				\
CPPFLAGS=					\
LDFLAGS="-Wl,-z,relro"				\
FLIBS=						\
rsharedir=/usr/share/R/share			\
rincludedir=/usr/share/R/include		\
rdocdir=/usr/share/R/doc			\
./configure --prefix=/usr			\
	    --with-cairo			\
	    --with-jpeglib			\
	    --with-readline			\
	    --with-tcltk			\
	    --mandir=/usr/share/man		\
	    --infodir=/usr/share/info		\
	    --datadir=/usr/share/R/share	\
	    --includedir=/usr/share/R/include	\
	    --with-blas		\
	    --with-lapack		\
	    --enable-long-double       \
	    --enable-R-profiling		\
	    --enable-R-shlib			\
	    --enable-memory-profiling		\
	    --without-recommended-packages	\
	    --build i686-linux-gnu
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking whether ln -s works... yes
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for /bin/tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip -n
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for xdg-open... /usr/bin/xdg-open
checking for working aclocal... found
checking for working autoconf... found
checking for working autoheader... found
checking for bison... bison -y
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking for sys/time.h... yes
checking for sys/param.h... yes
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking how to run the C preprocessor... gcc -E
looking for a modern Fortran compiler
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran accepts -g... yes
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking whether g++ -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 can compile C++ code... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc accepts -fvisibility... yes
checking whether g++ accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for gcc... gcc
checking whether the compiler supports GNU Objective C... no
checking whether gcc accepts -g... no
checking whether gcc -std=gnu17 is a C17 compiler... yes
checking whether gcc -std=gnu23 is a C23 compiler... no
checking whether gcc -std=gnu2x is a C23 compiler... no
checking whether gcc -std=gnu90 is a C90 compiler... yes
checking whether gcc -std=gnu99 is a C99 compiler... yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop
checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking for gawk... /usr/bin/awk
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking for readline/history.h... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking for tilde_expand_word... yes
checking whether rl_completion_matches exists and is declared... yes
checking whether rl_resize_terminal exists and is declared... yes
checking whether rl_sort_completion_matches exists and is declared... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for dlfcn.h... (cached) yes
checking for fcntl.h... yes
checking for glob.h... yes
checking for grp.h... yes
checking for pwd.h... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking for sys/resource.h... yes
checking for sys/select.h... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking for sys/time.h... (cached) yes
checking for sys/times.h... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking for utime.h... yes
checking for arpa/inet.h... yes
checking for elf.h... yes
checking for features.h... yes
checking for floatingpoint.h... no
checking for langinfo.h... yes
checking for netdb.h... yes
checking for netinet/in.h... yes
checking for sys/param.h... (cached) yes
checking for stdalign.h... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... yes
checking for locale.h... yes
checking for stdarg.h... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for egrep -e... (cached) /bin/grep -E
checking for GNU C library with version >= 2... yes
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of double... 8
checking size of size_t... 4
checking for C stack direction... down
checking size of long double... 12
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc supports -c -o FILE.lo... yes
checking for gcc option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran...  -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from gcc... -v
checking for C libraries of gcc...  -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -lgcc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc agree on int and double... yes
checking whether gfortran and gcc agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking whether we can compute ObjC Make dependencies... no
checking for type of 'hidden' Fortran character lengths... size_t
checking for xmkmf... no
checking whether g++  supports C++11 features with -std=gnu++11... yes
checking whether g++  supports C++14 features with -std=gnu++14... yes
checking whether g++  supports C++17 features with -std=gnu++17... yes
checking whether g++  supports C++20 features with -std=gnu++20... no
checking whether g++  supports C++20 features with -std=gnu++2a... no
checking whether g++  supports C++20 features with -std=c++20... no
checking whether g++  supports C++20 features with +std=c++20... no
checking whether g++  supports C++20 features with -std:c++20... no
checking whether g++  supports C++20 features with -std=c++2a... no
checking whether g++  supports C++20 features with +std=c++2a... no
checking whether g++  supports C++20 features with -std:c++2a... no
checking whether g++  supports C++20 features by default... no
configure: No compiler with C++20 support was found
checking whether   supports C++23 features with -std=gnu++23... no
checking whether   supports C++23 features with -std=gnu++2b... no
checking whether   supports C++23 features with -std=c++23... no
checking whether   supports C++23 features with +std=c++23... no
checking whether   supports C++23 features with -std:c++23... no
checking whether   supports C++23 features with -std=c++2b... no
checking whether   supports C++23 features with +std=c++2b... no
checking whether   supports C++23 features with -std:c++2b... no
checking whether   supports C++23 features by default... no
configure: No compiler with C++23 support was found
checking whether g++ -std=gnu++17 can compile ObjC++... no
checking whether  can compile ObjC++... no
checking for Objective C++ compiler... no working ObjC++ compiler found
checking for g++ -std=gnu++17 option to support OpenMP... -fopenmp
checking for option providing pthread_kill... none required
checking whether POSIX threads are supported... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for __cospi... no
checking for __sinpi... no
checking for __tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwnam exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether getline exists and is declared... yes
checking whether select exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether setrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking whether utimensat exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for dladdr... yes
checking for dlsym... yes
checking whether dladdr is declared... yes
checking whether dlsym is declared... yes
checking whether RTLD_DEFAULT is declared... yes
checking whether RTLD_NEXT is declared... yes
checking for thread.h... no
checking whether thr_stksegment exists and is declared... no
checking for stpcpy... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime, gmtime, localtime work correctly in 2020... yes
checking whether mktime sets errno... no
checking whether mktime works correctly after 2037... no
checking whether mktime works correctly before 1902... no
checking whether mktime works correctly in 1969... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for working ctanh... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
configure: searching for an external BLAS
configure: searching for BLAS in default libraries
checking for dgemm_... no
configure: searching for OpenBLAS
checking for sgemm_ in -lopenblas... no
configure: searching for BLIS
checking for sgemm_ in -lblis... no
configure: searching for ATLAS
checking for ATL_xerbla in -latlas... no
configure: searching for PhiPACK
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
configure: searching for IBM ESSL
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
configure: searching for generic BLAS library
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... no
checking for dpstrf_ in -llapack... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking whether iconv accepts "CP1252"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for wchar.h... (cached) yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking whether wcwidth exists and is declared... yes
checking whether wcswidth exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... yes
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh
checking for tcl.h... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR library... none required
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support suffices... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for libdeflate.h... no
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
checking if PCRE2 has Unicode support... yes
checking whether PCRE support suffices... yes
checking for curl-config... /usr/bin/curl-config
checking libcurl version ... 7.64.0
checking for curl/curl.h... yes
checking if libcurl is >= 7.28.0... yes
checking if libcurl supports https... yes
checking if pkg-config knows about libjpeg... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking if pkg-config knows about libpng... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking if pkg-config knows about libtiff... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for gcc option to enable large file support... -D_FILE_OFFSET_BITS=64
checking for declarations of fseeko and ftello... yes
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... (cached) -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a race-free mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... no
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... (cached) yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.3.2, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
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config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
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config.status: creating src/library/datasets/DESCRIPTION
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config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
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config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
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config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
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config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
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config.status: creating src/scripts/pager
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config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands
configure: WARNING: --with-libdeflate-compression requires libdeflate

R is now configured for i686-pc-linux-gnu

  Source directory:            .
  Installation directory:      /usr

  C compiler:                  gcc  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  Fortran fixed-form compiler: gfortran  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong

  Default C++ compiler:        g++ -std=gnu++17  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  C++11 compiler:              g++ -std=gnu++11  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  C++14 compiler:              g++ -std=gnu++14  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  C++17 compiler:              g++ -std=gnu++17  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
  C++20 compiler:                 
  C++23 compiler:                 
  Fortran free-form compiler:  gfortran  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong
  Obj-C compiler:	        

  Interfaces supported:        X11, tcltk
  External libraries:          pcre2, readline, BLAS(generic), LAPACK(generic), curl
  Additional capabilities:     PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:             shared R library, R profiling, memory profiling

  Capabilities skipped:        
  Options not enabled:         shared BLAS

  Recommended packages:        no

configure: WARNING: 32-bit build -- this is little tested
touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"			\
		CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2"			\
		FFLAGS="-g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong"			\
		FCFLAGS="-g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong"			\
		CC=gcc				\
		CXX=g++			\
		F77=gfortran			\
		LDFLAGS="-Wl,-z,relro"			\
		PKG_BUILT_STAMP=""""	\
		R_GZIPCMD="/bin/gzip -n"		\
		R
make[1]: Entering directory '/build/r-base-4.4.1'
make[2]: Entering directory '/build/r-base-4.4.1/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.4.1/m4'
make[2]: Entering directory '/build/r-base-4.4.1/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.4.1/tools'
make[2]: Entering directory '/build/r-base-4.4.1/doc'
make[3]: Entering directory '/build/r-base-4.4.1/doc/html'
make[3]: Leaving directory '/build/r-base-4.4.1/doc/html'
make[3]: Entering directory '/build/r-base-4.4.1/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/r-base-4.4.1/doc/manual'
make[2]: Leaving directory '/build/r-base-4.4.1/doc'
make[2]: Entering directory '/build/r-base-4.4.1/etc'
make[2]: Leaving directory '/build/r-base-4.4.1/etc'
make[2]: Entering directory '/build/r-base-4.4.1/share'
make[2]: Leaving directory '/build/r-base-4.4.1/share'
make[2]: Entering directory '/build/r-base-4.4.1/src'
make[3]: Entering directory '/build/r-base-4.4.1/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory '/build/r-base-4.4.1/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory '/build/r-base-4.4.1/src/scripts'
make[3]: Leaving directory '/build/r-base-4.4.1/src/scripts'
make[3]: Entering directory '/build/r-base-4.4.1/src/include'
mkdir -p -- ../../include
make[4]: Entering directory '/build/r-base-4.4.1/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory '/build/r-base-4.4.1/src/include/R_ext'
make[3]: Leaving directory '/build/r-base-4.4.1/src/include'
make[3]: Entering directory '/build/r-base-4.4.1/src/extra'
make[4]: Entering directory '/build/r-base-4.4.1/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.4.1/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
make[5]: Leaving directory '/build/r-base-4.4.1/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.4.1/src/extra/tre'
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regerror.c -o regerror.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regexec.c -o regexec.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o
ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o
ranlib libtre.a
make[5]: Leaving directory '/build/r-base-4.4.1/src/extra/tre'
make[4]: Leaving directory '/build/r-base-4.4.1/src/extra/tre'
make[3]: Leaving directory '/build/r-base-4.4.1/src/extra'
make[3]: Entering directory '/build/r-base-4.4.1/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[4]: Entering directory '/build/r-base-4.4.1/src/appl'
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c interv.c -o interv.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c maxcol.c -o maxcol.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pretty.c -o pretty.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c uncmin.c -o uncmin.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dchdc.f -o dchdc.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dpbfa.f -o dpbfa.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dpbsl.f -o dpbsl.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dpoco.f -o dpoco.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dpodi.f -o dpodi.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dpofa.f -o dpofa.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dposl.f -o dposl.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dqrdc.f -o dqrdc.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dqrls.f -o dqrls.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dqrsl.f -o dqrsl.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dqrutl.f -o dqrutl.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dsvdc.f -o dsvdc.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dtrco.f -o dtrco.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o  
ranlib libappl.a
make[4]: Leaving directory '/build/r-base-4.4.1/src/appl'
make[3]: Leaving directory '/build/r-base-4.4.1/src/appl'
make[3]: Entering directory '/build/r-base-4.4.1/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Entering directory '/build/r-base-4.4.1/src/nmath'
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mlutils.c -o mlutils.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c d1mach.c -o d1mach.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c i1mach.c -o i1mach.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmax2.c -o fmax2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmin2.c -o fmin2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fprec.c -o fprec.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fround.c -o fround.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ftrunc.c -o ftrunc.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sign.c -o sign.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fsign.c -o fsign.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imax2.c -o imax2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imin2.c -o imin2.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chebyshev.c -o chebyshev.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c log1p.c -o log1p.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgammacor.c -o lgammacor.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gammalims.c -o gammalims.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stirlerr.c -o stirlerr.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bd0.c -o bd0.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma.c -o gamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lgamma.c -o lgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c beta.c -o beta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lbeta.c -o lbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c polygamma.c -o polygamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cospi.c -o cospi.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_i.c -o bessel_i.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_j.c -o bessel_j.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_k.c -o bessel_k.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_y.c -o bessel_y.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c choose.c -o choose.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c snorm.c -o snorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sexp.c -o sexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgamma.c -o dgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgamma.c -o pgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgamma.c -o qgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgamma.c -o rgamma.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbeta.c -o dbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbeta.c -o pbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbeta.c -o qbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbeta.c -o rbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dunif.c -o dunif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c punif.c -o punif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qunif.c -o qunif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c runif.c -o runif.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnorm.c -o dnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnorm.c -o pnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnorm.c -o qnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnorm.c -o rnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlnorm.c -o dlnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plnorm.c -o plnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlnorm.c -o qlnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlnorm.c -o rlnorm.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c df.c -o df.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pf.c -o pf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qf.c -o qf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rf.c -o rf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnf.c -o dnf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dt.c -o dt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pt.c -o pt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qt.c -o qt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rt.c -o rt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnt.c -o dnt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dchisq.c -o dchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pchisq.c -o pchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qchisq.c -o qchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rchisq.c -o rchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnchisq.c -o rnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dbinom.c -o dbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pbinom.c -o pbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qbinom.c -o qbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbinom.c -o rbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rmultinom.c -o rmultinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dcauchy.c -o dcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pcauchy.c -o pcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qcauchy.c -o qcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rcauchy.c -o rcauchy.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dexp.c -o dexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pexp.c -o pexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qexp.c -o qexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rexp.c -o rexp.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgeom.c -o dgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pgeom.c -o pgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qgeom.c -o qgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rgeom.c -o rgeom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dhyper.c -o dhyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c phyper.c -o phyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qhyper.c -o qhyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rhyper.c -o rhyper.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbinom.c -o dnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbinom.c -o pnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom.c -o qnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rnbinom.c -o rnbinom.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dpois.c -o dpois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ppois.c -o ppois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qpois.c -o qpois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rpois.c -o rpois.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dweibull.c -o dweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pweibull.c -o pweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qweibull.c -o qweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rweibull.c -o rweibull.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dlogis.c -o dlogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plogis.c -o plogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qlogis.c -o qlogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlogis.c -o rlogis.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnchisq.c -o dnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnchisq.c -o pnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnchisq.c -o qnchisq.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbeta.c -o dnbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbeta.c -o pnbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbeta.c -o qnbeta.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnf.c -o pnf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pnt.c -o pnt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnf.c -o qnf.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qnt.c -o qnt.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ptukey.c -o ptukey.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qtukey.c -o qtukey.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c toms708.c -o toms708.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c wilcox.c -o wilcox.o
gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory '/build/r-base-4.4.1/src/nmath'
make[3]: Leaving directory '/build/r-base-4.4.1/src/nmath'
make[3]: Entering directory '/build/r-base-4.4.1/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[4]: Entering directory '/build/r-base-4.4.1/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rembedded.c -o Rembedded.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dynload.c -o dynload.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c system.c -o system.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sys-unix.c -o sys-unix.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sys-std.c -o sys-std.o
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[4]: Leaving directory '/build/r-base-4.4.1/src/unix'
make[4]: Entering directory '/build/r-base-4.4.1/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/r-base-4.4.1"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/r-base-4.4.1/src/unix'
make[3]: Leaving directory '/build/r-base-4.4.1/src/unix'
make[3]: Entering directory '/build/r-base-4.4.1/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making altclasses.d from altclasses.c
making altrep.d from altrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making clippath.d from clippath.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making flexiblas.d from flexiblas.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making machine.d from machine.c
making main.d from main.c
making mapply.d from mapply.c
making mask.d from mask.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making patterns.d from patterns.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making radixsort.d from radixsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Entering directory '/build/r-base-4.4.1/src/main'
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c CommandLineArgs.c -o CommandLineArgs.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rdynload.c -o Rdynload.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Renviron.c -o Renviron.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RNG.c -o RNG.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c agrep.c -o agrep.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c altclasses.c -o altclasses.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c altrep.c -o altrep.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c apply.c -o apply.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c arithmetic.c -o arithmetic.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c array.c -o array.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c attrib.c -o attrib.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bind.c -o bind.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c builtin.c -o builtin.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c character.c -o character.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c coerce.c -o coerce.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c complex.c -o complex.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c connections.c -o connections.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c context.c -o context.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cum.c -o cum.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dcf.c -o dcf.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c datetime.c -o datetime.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c debug.c -o debug.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c deparse.c -o deparse.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dotcode.c -o dotcode.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dounzip.c -o dounzip.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dstruct.c -o dstruct.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c duplicate.c -o duplicate.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c edit.c -o edit.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c engine.c -o engine.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c envir.c -o envir.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c errors.c -o errors.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c eval.c -o eval.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c flexiblas.c -o flexiblas.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c format.c -o format.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gevents.c -o gevents.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gram.c -o gram.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gram-ex.c -o gram-ex.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c grep.c -o grep.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c identical.c -o identical.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c inlined.c -o inlined.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c inspect.c -o inspect.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c internet.c -o internet.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c iosupport.c -o iosupport.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lapack.c -o lapack.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c list.c -o list.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c localecharset.c -o localecharset.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c logic.c -o logic.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c machine.c -o machine.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c main.c -o main.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mapply.c -o mapply.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c match.c -o match.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c memory.c -o memory.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c names.c -o names.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c objects.c -o objects.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c paste.c -o paste.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c platform.c -o platform.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plotmath.c -o plotmath.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c print.c -o print.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printarray.c -o printarray.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printvector.c -o printvector.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c printutils.c -o printutils.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c qsort.c -o qsort.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c radixsort.c -o radixsort.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c raw.c -o raw.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c registration.c -o registration.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c relop.c -o relop.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rlocale.c -o rlocale.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c saveload.c -o saveload.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c scan.c -o scan.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c seq.c -o seq.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c serialize.c -o serialize.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sort.c -o sort.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c source.c -o source.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c split.c -o split.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sprintf.c -o sprintf.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c startup.c -o startup.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subassign.c -o subassign.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subscript.c -o subscript.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c summary.c -o summary.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sysutils.c -o sysutils.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c times.c -o times.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unique.c -o unique.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c version.c -o version.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_alab_her.c -o g_alab_her.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_cntrlify.c -o g_cntrlify.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_fontdb.c -o g_fontdb.o
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c g_her_glyph.c -o g_her_glyph.o
gfortran  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c xxxpr.f -o xxxpr.o
gcc -shared -fopenmp -Wl,-z,relro  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a    -lblas -lgfortran -lm -lquadmath   -lreadline  -lpcre2-8 -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n   
make[5]: Entering directory '/build/r-base-4.4.1/src/main'
mkdir -p -- /build/r-base-4.4.1/bin/exec
mkdir -p -- /build/r-base-4.4.1/lib
make[5]: Leaving directory '/build/r-base-4.4.1/src/main'
make[4]: Leaving directory '/build/r-base-4.4.1/src/main'
make[4]: Entering directory '/build/r-base-4.4.1/src/main'
gcc -I../../src/extra  -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmain.c -o Rmain.o
gcc -Wl,--export-dynamic -fopenmp  -L"../../lib" -Wl,-z,relro -o R.bin Rmain.o  -lR 
make[5]: Entering directory '/build/r-base-4.4.1/src/main'
make[5]: Leaving directory '/build/r-base-4.4.1/src/main'
make[4]: Leaving directory '/build/r-base-4.4.1/src/main'
make[3]: Leaving directory '/build/r-base-4.4.1/src/main'
make[3]: Entering directory '/build/r-base-4.4.1/src/modules'
make[4]: Entering directory '/build/r-base-4.4.1/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory '/build/r-base-4.4.1/src/modules/internet'
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c internet.c -o internet.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c libcurl.c -o libcurl.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c sock.c -o sock.o
gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR  
make[6]: Entering directory '/build/r-base-4.4.1/src/modules/internet'
mkdir -p -- /build/r-base-4.4.1/modules
make[6]: Leaving directory '/build/r-base-4.4.1/src/modules/internet'
make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/internet'
make[4]: Leaving directory '/build/r-base-4.4.1/src/modules/internet'
make[4]: Entering directory '/build/r-base-4.4.1/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory '/build/r-base-4.4.1/src/modules/lapack'
gcc -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lapack.c -o Lapack.o
gcc -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c  ../../main/flexiblas.c -o flexiblas.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o lapack.so  Lapack.o  flexiblas.o -lR  -llapack -lblas -lgfortran -lm -lquadmath
make[6]: Entering directory '/build/r-base-4.4.1/src/modules/lapack'
make[6]: Leaving directory '/build/r-base-4.4.1/src/modules/lapack'
make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/lapack'
make[4]: Leaving directory '/build/r-base-4.4.1/src/modules/lapack'
make[4]: Entering directory '/build/r-base-4.4.1/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory '/build/r-base-4.4.1/src/modules/X11'
gcc -I/usr/include/libpng16 -I/usr/include/i386-linux-gnu -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devX11.c -o devX11.o
gcc -I/usr/include/libpng16 -I/usr/include/i386-linux-gnu -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rotated.c -o rotated.o
gcc -I/usr/include/libpng16 -I/usr/include/i386-linux-gnu -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rbitmap.c -o rbitmap.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt  -lR -lm 
gcc -I/usr/include/libpng16 -I/usr/include/i386-linux-gnu -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dataentry.c -o dataentry.o
gcc -shared -L"../../../lib" -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt  -lR -lm 
make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.4.1/src/modules/X11'
make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/X11'
make[4]: Leaving directory '/build/r-base-4.4.1/src/modules/X11'
make[3]: Leaving directory '/build/r-base-4.4.1/src/modules'
make[3]: Entering directory '/build/r-base-4.4.1/src/library'
mkdir -p -- ../../library
make[4]: Entering directory '/build/r-base-4.4.1/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/profile'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[5]: Entering directory '/build/r-base-4.4.1/src/library/translations'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/translations'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/translations'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/base'
building package 'base'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/base'
mkdir -p -- ../../../library/base/demo
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/base'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/base'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tools'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making pdscan.d from pdscan.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c text.c -o text.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmd5.c -o Rmd5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c md5.c -o md5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c signals.c -o signals.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c install.c -o install.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c getfmts.c -o getfmts.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c http.c -o http.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gramLatex.c -o gramLatex.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gramRd.c -o gramRd.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pdscan.c -o pdscan.o
gcc -shared -L../../../../lib -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.4.1/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/tools/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/tools/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory '/build/r-base-4.4.1/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/compiler'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/compiler'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/compiler'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/base'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
making hashtab.d from hashtab.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c -o io.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c size.c -o size.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sock.c -o sock.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c hashtab.c -o hashtab.o
gcc -shared -L../../../../lib -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.4.1/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/utils/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/utils/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/fonts/Roboto
mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making clippath.d from clippath.c
making patterns.d from patterns.c
making mask.d from mask.c
making group.d from group.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c axis_scales.c -o axis_scales.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chull.c -o chull.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c group.c -o group.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devCairo.c -o devCairo.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devPicTeX.c -o devPicTeX.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devPS.c -o devPS.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c devQuartz.c -o devQuartz.o
gcc -shared -L../../../../lib -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cairoBM.c -o cairoBM.o
gcc -shared -L"../../../../../lib" -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm 
make[10]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c base.c -o base.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c par.c -o par.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stem.c -o stem.o
gcc -shared -L../../../../lib -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.4.1/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/graphics/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/graphics/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c kmeans.c -o kmeans.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ansari.c -o ansari.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bandwidths.c -o bandwidths.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chisqsim.c -o chisqsim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c d2x2xk.c -o d2x2xk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fexact.c -o fexact.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c kendall.c -o kendall.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ks.c -o ks.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c line.c -o line.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c smooth.c -o smooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c prho.c -o prho.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c swilk.c -o swilk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ksmooth.c -o ksmooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c loessc.c -o loessc.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c monoSpl.c -o monoSpl.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c isoreg.c -o isoreg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Srunmed.c -o Srunmed.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dblcen.c -o dblcen.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c distance.c -o distance.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c hclust-utils.c -o hclust-utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nls.c -o nls.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rWishart.c -o rWishart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c HoltWinters.c -o HoltWinters.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c PPsum.c -o PPsum.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c arima.c -o arima.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c burg.c -o burg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c filter.c -o filter.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mAR.c -o mAR.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pacf.c -o pacf.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c starma.c -o starma.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c port.c -o port.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c family.c -o family.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sbart.c -o sbart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c approx.c -o approx.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c loglin.c -o loglin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lowess.c -o lowess.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c massdist.c -o massdist.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lm.c -o lm.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c complete_cases.c -o complete_cases.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cov.c -o cov.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c deriv.c -o deriv.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c -o fft.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fourier.c -o fourier.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c model.c -o model.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optimize.c -o optimize.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c distn.c -o distn.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c zeroin.c -o zeroin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rcont.c -o rcont.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fopenmp -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c influence.c -o influence.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c bsplvd.f -o bsplvd.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c bvalue.f -o bvalue.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c bvalus.f -o bvalus.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c loessf.f -o loessf.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c ppr.f -o ppr.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c qsbart.f -o qsbart.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c sgram.f -o sgram.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c sinerp.f -o sinerp.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c sslvrg.f -o sslvrg.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c stxwx.f -o stxwx.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c hclust.f -o hclust.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c kmns.f -o kmns.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c eureka.f -o eureka.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c stl.f -o stl.o
gfortran -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -msse2 -mfpmath=sse  -c portsrc.f -o portsrc.o
gfortran -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -c lminfl.f -o lminfl.o
gcc -shared -L../../../../lib -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.4.1/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/stats/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/stats/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory '/build/r-base-4.4.1/src/library/datasets'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/datasets'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory '/build/r-base-4.4.1/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/methods'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c do_substitute_direct.c -o do_substitute_direct.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c slot.c -o slot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c class_support.c -o class_support.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tests.c -o tests.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o
gcc -shared -L../../../../lib -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.4.1/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/methods/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/methods/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/methods'
byte-compiling package 'methods'
initializing class and method definitions ... done
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grid'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/grid/src'
making clippath.d from clippath.c
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making mask.d from mask.c
making matrix.d from matrix.c
making path.d from path.c
making register.d from register.c
making state.d from state.c
making typeset.d from typeset.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c gpar.c -o gpar.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c grid.c -o grid.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c just.c -o just.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c layout.c -o layout.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c matrix.c -o matrix.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c path.c -o path.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c register.c -o register.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c state.c -o state.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c typeset.c -o typeset.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unit.c -o unit.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c viewport.c -o viewport.o
gcc -shared -L../../../../lib -Wl,-z,relro -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.4.1/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/grid/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/grid/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory '/build/r-base-4.4.1/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/splines'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/splines/src'
making splines.d from splines.c
gcc -I"../../../../include" -DNDEBUG      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o
gcc -shared -L../../../../lib -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.4.1/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/splines/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/splines/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk.c -o tcltk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk_unix.c -o tcltk_unix.o
gcc -shared -L../../../../lib -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/i386-linux-gnu -ltcl8.6 -L/usr/lib/i386-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory '/build/r-base-4.4.1/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk/src'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rngstream.c -o rngstream.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fork.c -o fork.o
gcc -shared -L../../../../lib -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory '/build/r-base-4.4.1/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/parallel/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/parallel/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/base'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/r-base-4.4.1/src/library'
make[2]: Leaving directory '/build/r-base-4.4.1/src'
make[2]: Entering directory '/build/r-base-4.4.1/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.4.1/tests'
you should 'make docs' now ...
make[1]: Leaving directory '/build/r-base-4.4.1'
(cd src/nmath/standalone;				\
	/usr/bin/make	CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"		\
		CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"	\
		FFLAGS="-g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -D_REENTRANT"	\
		CC=gcc				\
		CXX=g++			\
		F77=gfortran			\
		R_GZIPCMD="/bin/gzip -n"		\
		libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
		shared static )
make[1]: Entering directory '/build/r-base-4.4.1/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory '/build/r-base-4.4.1/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/build/r-base-4.4.1/src/include'
Copying source files
make[2]: Entering directory '/build/r-base-4.4.1/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory '/build/r-base-4.4.1/src/nmath/standalone'
make[2]: Entering directory '/build/r-base-4.4.1/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.lo
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -shared -fopenmp -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[2]: Leaving directory '/build/r-base-4.4.1/src/nmath/standalone'
make[2]: Entering directory '/build/r-base-4.4.1/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.o
gcc -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.o
ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
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make[3]: Entering directory '/build/r-base-4.4.1/src/appl'
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make[4]: Entering directory '/build/r-base-4.4.1/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/r-base-4.4.1"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/r-base-4.4.1/src/unix'
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make[3]: Entering directory '/build/r-base-4.4.1/src/main'
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make[3]: Entering directory '/build/r-base-4.4.1/src/modules'
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make[3]: Entering directory '/build/r-base-4.4.1/src/library'
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building system startup profile
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building package 'translations'
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all.R is unchanged
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building package 'tools'
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all.R is unchanged
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installing 'sysdata.rda'
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building package 'compiler'
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all.R is unchanged
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building package 'utils'
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all.R is unchanged
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installing 'sysdata.rda'
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building package 'grDevices'
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all.R is unchanged
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make[8]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
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building package 'graphics'
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all.R is unchanged
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make[4]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
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building package 'stats'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats'
all.R is unchanged
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../../../../library/stats/libs/stats.so is unchanged
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make[5]: Nothing to be done for 'mklazycomp'.
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building package 'datasets'
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building package 'methods'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/methods'
all.R is unchanged
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make[5]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
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make[5]: Nothing to be done for 'RfilesLazy'.
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make[4]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grid'
all.R is unchanged
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../../../../library/grid/libs/grid.so is unchanged
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building package 'splines'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/splines'
all.R is unchanged
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make[5]: Nothing to be done for 'mklazycomp'.
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make[4]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
all.R is unchanged
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make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
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../../../../library/tcltk/libs/tcltk.so is unchanged
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make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/parallel/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/parallel/src'
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make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/base'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/r-base-4.4.1/src/library'
make[2]: Leaving directory '/build/r-base-4.4.1/src'
make[2]: Entering directory '/build/r-base-4.4.1/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.4.1/tests'
you should 'make docs' now ...
make[2]: Entering directory '/build/r-base-4.4.1/doc'
creating doc/NEWS
creating doc/NEWS.pdf
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creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
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creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
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make[4]: Entering directory '/build/r-base-4.4.1/doc/html'
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make[3]: Leaving directory '/build/r-base-4.4.1/doc/manual'
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make[2]: Entering directory '/build/r-base-4.4.1/src/library'
make[3]: Entering directory '/build/r-base-4.4.1/src/library'
installing parsed Rd
make[4]: Entering directory '/build/r-base-4.4.1/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/build/r-base-4.4.1/src/library'
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building/updating package metadata ...
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writing package indices
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make[1]: Leaving directory '/build/r-base-4.4.1'
/usr/bin/make javaconf
make[1]: Entering directory '/build/r-base-4.4.1'
make[2]: Entering directory '/build/r-base-4.4.1/m4'
make[2]: Nothing to be done for 'R'.
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make[2]: Entering directory '/build/r-base-4.4.1/tools'
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make[2]: Entering directory '/build/r-base-4.4.1/doc'
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make[3]: Entering directory '/build/r-base-4.4.1/doc/manual'
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make[2]: Entering directory '/build/r-base-4.4.1/etc'
make[2]: Leaving directory '/build/r-base-4.4.1/etc'
make[2]: Entering directory '/build/r-base-4.4.1/share'
make[2]: Leaving directory '/build/r-base-4.4.1/share'
make[2]: Entering directory '/build/r-base-4.4.1/src'
make[3]: Entering directory '/build/r-base-4.4.1/src/scripts'
make[4]: Entering directory '/build/r-base-4.4.1/src/scripts'
make[4]: Leaving directory '/build/r-base-4.4.1/src/scripts'
make[3]: Leaving directory '/build/r-base-4.4.1/src/scripts'
make[3]: Entering directory '/build/r-base-4.4.1/src/include'
make[4]: Entering directory '/build/r-base-4.4.1/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/r-base-4.4.1/src/include/R_ext'
make[3]: Leaving directory '/build/r-base-4.4.1/src/include'
make[3]: Entering directory '/build/r-base-4.4.1/src/extra'
make[4]: Entering directory '/build/r-base-4.4.1/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.4.1/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/r-base-4.4.1/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.4.1/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/build/r-base-4.4.1/src/extra/tre'
make[4]: Leaving directory '/build/r-base-4.4.1/src/extra/tre'
make[3]: Leaving directory '/build/r-base-4.4.1/src/extra'
make[3]: Entering directory '/build/r-base-4.4.1/src/appl'
make[4]: Entering directory '/build/r-base-4.4.1/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.4.1/src/appl'
make[3]: Leaving directory '/build/r-base-4.4.1/src/appl'
make[3]: Entering directory '/build/r-base-4.4.1/src/nmath'
make[4]: Entering directory '/build/r-base-4.4.1/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.4.1/src/nmath'
make[3]: Leaving directory '/build/r-base-4.4.1/src/nmath'
make[3]: Entering directory '/build/r-base-4.4.1/src/unix'
make[4]: Entering directory '/build/r-base-4.4.1/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.4.1/src/unix'
make[4]: Entering directory '/build/r-base-4.4.1/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/r-base-4.4.1"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/r-base-4.4.1/src/unix'
make[3]: Leaving directory '/build/r-base-4.4.1/src/unix'
make[3]: Entering directory '/build/r-base-4.4.1/src/main'
make[4]: Entering directory '/build/r-base-4.4.1/src/main'
make[5]: Entering directory '/build/r-base-4.4.1/src/main'
/build/r-base-4.4.1/lib/libR.so is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/main'
make[4]: Leaving directory '/build/r-base-4.4.1/src/main'
make[4]: Entering directory '/build/r-base-4.4.1/src/main'
make[5]: Entering directory '/build/r-base-4.4.1/src/main'
/build/r-base-4.4.1/bin/exec/R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/main'
make[4]: Leaving directory '/build/r-base-4.4.1/src/main'
make[3]: Leaving directory '/build/r-base-4.4.1/src/main'
make[3]: Entering directory '/build/r-base-4.4.1/src/modules'
make[4]: Entering directory '/build/r-base-4.4.1/src/modules/internet'
make[5]: Entering directory '/build/r-base-4.4.1/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/internet'
make[4]: Leaving directory '/build/r-base-4.4.1/src/modules/internet'
make[4]: Entering directory '/build/r-base-4.4.1/src/modules/lapack'
make[5]: Entering directory '/build/r-base-4.4.1/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/lapack'
make[4]: Leaving directory '/build/r-base-4.4.1/src/modules/lapack'
make[4]: Entering directory '/build/r-base-4.4.1/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.4.1/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.4.1/src/modules/X11'
/build/r-base-4.4.1/modules/R_X11.so is unchanged
/build/r-base-4.4.1/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/X11'
make[4]: Leaving directory '/build/r-base-4.4.1/src/modules/X11'
make[3]: Leaving directory '/build/r-base-4.4.1/src/modules'
make[3]: Entering directory '/build/r-base-4.4.1/src/library'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/profile'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/translations'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/translations'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/translations'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/base'
building package 'base'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/base'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/base'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tools'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/tools/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/tools/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/tools/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/compiler'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/compiler'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/compiler'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/base'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/utils/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/utils/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/utils/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/graphics/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/graphics/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/graphics/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/stats/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/stats/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/stats/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/datasets'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/datasets'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/datasets'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/methods'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/methods/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/methods/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/methods/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grid'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/grid/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/grid/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/grid/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/splines'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/splines/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/splines/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/splines/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk/src'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk/src'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/parallel/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/parallel/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/parallel/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/base'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/r-base-4.4.1/src/library'
make[2]: Leaving directory '/build/r-base-4.4.1/src'
make[2]: Entering directory '/build/r-base-4.4.1/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.4.1/tests'
make[2]: Entering directory '/build/r-base-4.4.1'
configuring Java ...
Java interpreter : /usr/lib/jvm/default-java/bin/java
Java version     : 11.0.16
Java home path   : /usr/lib/jvm/default-java
Java compiler    : /usr/lib/jvm/default-java/bin/javac
Java headers gen.: 
Java archive tool: /usr/lib/jvm/default-java/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/client -ljvm
using C compiler: 'gcc (Debian 8.3.0-6) 8.3.0'
make[3]: Entering directory '/tmp/Rjavareconf.JxOovy'
gcc -I"/build/r-base-4.4.1/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c conftest.c -o conftest.o
gcc -shared -L/build/r-base-4.4.1/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/client -ljvm -L/build/r-base-4.4.1/lib -lR
make[3]: Leaving directory '/tmp/Rjavareconf.JxOovy'


JAVA_HOME        : /usr/lib/jvm/default-java
Java library path: $(JAVA_HOME)/lib/client
JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/client -ljvm
Updating Java configuration in /build/r-base-4.4.1
Done.

make[2]: Leaving directory '/build/r-base-4.4.1'
make[1]: Leaving directory '/build/r-base-4.4.1'
touch make-arch-stamp
*** make-indep ***
/usr/bin/make -k docs
make[1]: Entering directory '/build/r-base-4.4.1'
make[2]: Entering directory '/build/r-base-4.4.1/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.4.1/m4'
make[2]: Entering directory '/build/r-base-4.4.1/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.4.1/tools'
make[2]: Entering directory '/build/r-base-4.4.1/doc'
make[3]: Entering directory '/build/r-base-4.4.1/doc/html'
make[3]: Leaving directory '/build/r-base-4.4.1/doc/html'
make[3]: Entering directory '/build/r-base-4.4.1/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/build/r-base-4.4.1/doc/manual'
make[2]: Leaving directory '/build/r-base-4.4.1/doc'
make[2]: Entering directory '/build/r-base-4.4.1/etc'
make[2]: Leaving directory '/build/r-base-4.4.1/etc'
make[2]: Entering directory '/build/r-base-4.4.1/share'
make[2]: Leaving directory '/build/r-base-4.4.1/share'
make[2]: Entering directory '/build/r-base-4.4.1/src'
make[3]: Entering directory '/build/r-base-4.4.1/src/scripts'
make[4]: Entering directory '/build/r-base-4.4.1/src/scripts'
make[4]: Leaving directory '/build/r-base-4.4.1/src/scripts'
make[3]: Leaving directory '/build/r-base-4.4.1/src/scripts'
make[3]: Entering directory '/build/r-base-4.4.1/src/include'
make[4]: Entering directory '/build/r-base-4.4.1/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/build/r-base-4.4.1/src/include/R_ext'
make[3]: Leaving directory '/build/r-base-4.4.1/src/include'
make[3]: Entering directory '/build/r-base-4.4.1/src/extra'
make[4]: Entering directory '/build/r-base-4.4.1/src/extra/tre'
make[5]: Entering directory '/build/r-base-4.4.1/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/build/r-base-4.4.1/src/extra/tre'
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make[5]: 'libtre.a' is up to date.
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make[3]: Leaving directory '/build/r-base-4.4.1/src/extra'
make[3]: Entering directory '/build/r-base-4.4.1/src/appl'
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make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/build/r-base-4.4.1/src/appl'
make[3]: Leaving directory '/build/r-base-4.4.1/src/appl'
make[3]: Entering directory '/build/r-base-4.4.1/src/nmath'
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make[3]: Entering directory '/build/r-base-4.4.1/src/unix'
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make[4]: Leaving directory '/build/r-base-4.4.1/src/unix'
make[4]: Entering directory '/build/r-base-4.4.1/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/r-base-4.4.1"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/build/r-base-4.4.1/src/unix'
make[3]: Leaving directory '/build/r-base-4.4.1/src/unix'
make[3]: Entering directory '/build/r-base-4.4.1/src/main'
make[4]: Entering directory '/build/r-base-4.4.1/src/main'
make[5]: Entering directory '/build/r-base-4.4.1/src/main'
/build/r-base-4.4.1/lib/libR.so is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/main'
make[4]: Leaving directory '/build/r-base-4.4.1/src/main'
make[4]: Entering directory '/build/r-base-4.4.1/src/main'
make[5]: Entering directory '/build/r-base-4.4.1/src/main'
/build/r-base-4.4.1/bin/exec/R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/main'
make[4]: Leaving directory '/build/r-base-4.4.1/src/main'
make[3]: Leaving directory '/build/r-base-4.4.1/src/main'
make[3]: Entering directory '/build/r-base-4.4.1/src/modules'
make[4]: Entering directory '/build/r-base-4.4.1/src/modules/internet'
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make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/internet'
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make[4]: Entering directory '/build/r-base-4.4.1/src/modules/lapack'
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make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/lapack'
make[4]: Leaving directory '/build/r-base-4.4.1/src/modules/lapack'
make[4]: Entering directory '/build/r-base-4.4.1/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.4.1/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/X11'
make[5]: Entering directory '/build/r-base-4.4.1/src/modules/X11'
/build/r-base-4.4.1/modules/R_X11.so is unchanged
/build/r-base-4.4.1/modules/R_de.so is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/modules/X11'
make[4]: Leaving directory '/build/r-base-4.4.1/src/modules/X11'
make[3]: Leaving directory '/build/r-base-4.4.1/src/modules'
make[3]: Entering directory '/build/r-base-4.4.1/src/library'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/profile'
building system startup profile
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/profile'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/translations'
building package 'translations'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/translations'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/translations'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/translations'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/base'
building package 'base'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/base'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/base'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/tools'
building package 'tools'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tools'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/tools/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/tools/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/tools/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/compiler'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/compiler'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/compiler'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/base'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/tools'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/utils'
building package 'utils'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/utils/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/utils/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/utils/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
installing 'sysdata.rda'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/utils'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[9]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[10]: Entering directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/grDevices'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/graphics/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/graphics/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/graphics/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/graphics'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/stats'
building package 'stats'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/stats/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/stats/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/stats/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/stats'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/datasets'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/datasets'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/datasets'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/methods'
building package 'methods'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/methods'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/methods/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/methods/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/methods/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/methods'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/grid'
building package 'grid'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grid'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/grid/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/grid/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/grid/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/grid'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/splines'
building package 'splines'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/splines'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/splines/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/splines/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/splines/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/splines'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk/src'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk/src'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/parallel/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/parallel/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/parallel/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/base'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/r-base-4.4.1/src/library'
make[2]: Leaving directory '/build/r-base-4.4.1/src'
make[2]: Entering directory '/build/r-base-4.4.1/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.4.1/tests'
make[2]: Entering directory '/build/r-base-4.4.1/doc'
make[3]: Entering directory '/build/r-base-4.4.1/doc/manual'
make[4]: Entering directory '/build/r-base-4.4.1/doc/html'
make[4]: Leaving directory '/build/r-base-4.4.1/doc/html'
make[3]: Leaving directory '/build/r-base-4.4.1/doc/manual'
make[2]: Leaving directory '/build/r-base-4.4.1/doc'
make[2]: Entering directory '/build/r-base-4.4.1/src/library'
make[3]: Entering directory '/build/r-base-4.4.1/src/library'
installing parsed Rd
make[4]: Entering directory '/build/r-base-4.4.1/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/build/r-base-4.4.1/src/library'
make[3]: Leaving directory '/build/r-base-4.4.1/src/library'
make[3]: Entering directory '/build/r-base-4.4.1/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/build/r-base-4.4.1/src/library'
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Chapter 1.
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
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[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
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\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
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[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
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[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
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\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
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[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
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[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

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[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
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[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
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[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
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[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
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i /
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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R \T1/ptm/m/n/10 3.2.0: for use within
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\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
[263] [264]
Underfull \hbox (badness 1092) in paragraph at lines 17253--17258
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
[265] [266] [267] [268]
Underfull \hbox (badness 6741) in paragraph at lines 17506--17510
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
[269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279]
Underfull \vbox (badness 10000) has occurred while \output is active [280]
Underfull \vbox (badness 10000) has occurred while \output is active [281]
[282] [283] [284] [285] [286] [287] [288] [289] [290]
Underfull \hbox (badness 1769) in paragraph at lines 18979--18982
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[291] [292] [293] [294] [295]
Underfull \hbox (badness 10000) in paragraph at lines 19288--19290
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19294--19303
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[296] [297] [298] [299] [300] [301] [302] [303] [304]
Underfull \hbox (badness 1442) in paragraph at lines 19902--19904
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[305] [306]
Underfull \hbox (badness 2452) in paragraph at lines 19998--20024
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 19998--20024
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]
[307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 1248) in paragraph at lines 20395--20398
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[313] [314] [315] [316]
Underfull \hbox (badness 4739) in paragraph at lines 20658--20660
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328]
[329] [330] [331] [332] [333] [334] [335]
Underfull \hbox (badness 2469) in paragraph at lines 21816--21821
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[336] [337]
Underfull \hbox (badness 1675) in paragraph at lines 21903--21912
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21913--21926
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 21961--21964
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21961--21964
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by
[338] [339]
Underfull \hbox (badness 1014) in paragraph at lines 22095--22100
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352]
Underfull \hbox (badness 1264) in paragraph at lines 22942--22950
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[353]
Underfull \hbox (badness 4441) in paragraph at lines 22977--22980
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 5231) in paragraph at lines 23795--23797
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377]
[378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 6380) in paragraph at lines 24905--24911
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24905--24911
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]
[384] [385] [386] [387] [388] [389] [390] [391]
Underfull \hbox (badness 2790) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[392] [393] [394] [395] [396]
Underfull \hbox (badness 1194) in paragraph at lines 25746--25749
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[397] [398] [399]
Underfull \hbox (badness 2368) in paragraph at lines 25953--25959
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[400] [401] [402] [403] [404] [405]
Underfull \hbox (badness 10000) in paragraph at lines 26343--26346
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[406] [407] [408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 10000) in paragraph at lines 26971--26973
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[416] [417] [418] [419] [420] [421] [422]
Underfull \hbox (badness 2443) in paragraph at lines 27462--27470
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For
[423] [424] [425] [426] [427] [428] [429]
Underfull \hbox (badness 1881) in paragraph at lines 27892--27895
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27917--27919
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[430] [431]
Underfull \hbox (badness 2142) in paragraph at lines 28058--28062
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28115--28120
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[432] [433] [434] [435]
Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28424--28427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 28450--28452
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28496--28501
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
[436]
Underfull \hbox (badness 2529) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 28514--28517
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[437] [438] [439] [440] [441]
Underfull \vbox (badness 10000) has occurred while \output is active [442]
Underfull \hbox (badness 10000) in paragraph at lines 28932--28936
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[443] [444]
Underfull \hbox (badness 10000) in paragraph at lines 29079--29082
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[445]
Underfull \hbox (badness 7925) in paragraph at lines 29160--29164
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29160--29164
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29165--29174
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457]
[458] [459] [460] [461]
Underfull \hbox (badness 2726) in paragraph at lines 30179--30182
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473]
[474] [475] [476] [477] [478] [479] [480]
Underfull \vbox (badness 3803) has occurred while \output is active [481]
[482] [483] [484] [485] [486] [487] [488] [489]
Underfull \hbox (badness 1533) in paragraph at lines 31986--31989
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[490] [491] [492]
Underfull \hbox (badness 1163) in paragraph at lines 32157--32168
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[493] [494] [495] [496] [497] [498] [499]
Underfull \vbox (badness 3803) has occurred while \output is active [500]
[501]
Underfull \hbox (badness 6300) in paragraph at lines 32703--32705
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:
[502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513]
[514] [515] [516] [517] [518]
Underfull \hbox (badness 10000) in paragraph at lines 33826--33830
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 33826--33830
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 33847--33849
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 33850--33854
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
[519] [520]
Underfull \vbox (badness 10000) has occurred while \output is active [521]
[522] [523] [524] [525] [526] [527] [528]
Underfull \hbox (badness 1655) in paragraph at lines 34452--34454
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
[529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540]
[541] [542] [543] [544] [545] [546] [547]
Underfull \hbox (badness 2261) in paragraph at lines 35655--35660
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
[548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559]
[560] [561] [562] [563]
Underfull \hbox (badness 3668) in paragraph at lines 36690--36694
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with
[564]
Underfull \hbox (badness 10000) in paragraph at lines 36781--36792
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?
[565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576]
[577] [578] [579] [580] [581] [582] [583] [584] [585] [586] [587] [588]
[589]
Underfull \hbox (badness 10000) in paragraph at lines 38413--38415
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[590] [591] [592] [593] [594] [595] [596]
Underfull \hbox (badness 2913) in paragraph at lines 38831--38835
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
[597] [598] [599]
Underfull \hbox (badness 1072) in paragraph at lines 39077--39081
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
[600]
Underfull \hbox (badness 10000) in paragraph at lines 39082--39086
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39122--39128
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39122--39128
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

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\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

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[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

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\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

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\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

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\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
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[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an

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[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
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[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

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[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
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[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
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[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
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[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >
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[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /
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[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .

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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /
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[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

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\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if
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[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
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[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
[723] [724]
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\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.
[725] [726] [727]
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[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.
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[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[735]
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[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named
[736]) (./compiler-pkg.tex
Chapter 2.
[737] [738] [739] [740]) (./datasets-pkg.tex
Chapter 3.
[741] [742] [743] [744] [745]
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[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
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 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
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[813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823])
(./grDevices-pkg.tex [824]
Chapter 4.
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[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in
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[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as
[839] [840] [841] [842] [843] [844]
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /
[847] [848] [849] [850] [851]
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\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,
[858] [859]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,
[895] [896] [897] [898] [899] [900] [901]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.symbol}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.4872 \aliasA{symbol}{plotmath}{symbol}
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[907]
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[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[914]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[915] [916]
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,
[917]
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[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[918] [919] [920]
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,
[921] [922] [923] [924] [925] [926] [927]
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[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-
[928]
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[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space
[929] [930] [931] [932]
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 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[943]
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[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and
[944] [945] [946] [947] [948]
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex
Chapter 5.
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 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
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[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also
[995]
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",
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(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1202] [1203]
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a
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[1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235])
(./methods-pkg.tex [1236]
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the
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[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
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[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",
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[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


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[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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                                                 [1338]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /
[1383]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388]
Chapter 8.

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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the
[1411] [1412]) (./splines-pkg.tex
Chapter 9.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables
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[1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex
Chapter 10.
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

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[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1604]
Underfull \hbox (badness 1253) in paragraph at lines 11114--11117
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,
[1605]
Underfull \hbox (badness 1708) in paragraph at lines 11176--11180
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1606] [1607] [1608] [1609] [1610] [1611]
Underfull \hbox (badness 1694) in paragraph at lines 11572--11575
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.12053 \aliasA{hat}{influence.measures}{hat}
                                              [1620] [1621]
Underfull \hbox (badness 1484) in paragraph at lines 12198--12200
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1622]
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[1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631]
Underfull \hbox (badness 10000) in paragraph at lines 12785--12787
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =
[1632] [1633] [1634] [1635] [1636]
Underfull \hbox (badness 2894) in paragraph at lines 13127--13131
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1637] [1638] [1639] [1640] [1641] [1642] [1643]
Underfull \hbox (badness 1496) in paragraph at lines 13555--13561
[]\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
[1644] [1645] [1646] [1647] [1648] [1649]
Underfull \hbox (badness 4518) in paragraph at lines 13958--13963
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659]
Underfull \hbox (badness 4518) in paragraph at lines 14620--14625
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1660] [1661] [1662]
Underfull \hbox (badness 6412) in paragraph at lines 14760--14764
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14767--14769
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is
[1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673]
[1674] [1675] [1676] [1677] [1678] [1679] [1680]
Underfull \hbox (badness 2503) in paragraph at lines 15843--15847
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688]
Underfull \hbox (badness 10000) in paragraph at lines 16356--16362
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16356--16362
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms
[1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699]
[1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710]
[1711] [1712] [1713] [1714] [1715]
Underfull \hbox (badness 1158) in paragraph at lines 18014--18017
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-
[1716] [1717]
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Underfull \vbox (badness 10000) has occurred while \output is active [1719]
[1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730]
[1731] [1732]
Underfull \hbox (badness 1377) in paragraph at lines 19057--19062
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19062--19065
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19075--19079
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19075--19079
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19083--19087
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if
[1733] [1734] [1735]
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Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
[1737] [1738] [1739] [1740] [1741] [1742] [1743]
Underfull \hbox (badness 1337) in paragraph at lines 19773--19776
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752]
Underfull \hbox (badness 10000) in paragraph at lines 20242--20248
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col
[1753] [1754] [1755] [1756] [1757] [1758] [1759]
Underfull \hbox (badness 1194) in paragraph at lines 20669--20672
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1760] [1761] [1762] [1763] [1764] [1765]
Underfull \hbox (badness 2503) in paragraph at lines 21047--21050
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 21074--21076
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson
[1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776]
[1777] [1778] [1779] [1780] [1781] [1782] [1783]
Underfull \hbox (badness 10000) in paragraph at lines 22152--22158
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794]
[1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] [1803] [1804] [1805]
[1806] [1807] [1808]
Underfull \hbox (badness 1337) in paragraph at lines 23628--23634
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816]
Underfull \hbox (badness 1436) in paragraph at lines 24118--24121
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,
[1817]
Underfull \hbox (badness 10000) in paragraph at lines 24256--24257
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828]
[1829] [1830] [1831] [1832] [1833]
Underfull \hbox (badness 1824) in paragraph at lines 25226--25232
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 25226--25232
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1834]
Underfull \hbox (badness 10000) in paragraph at lines 25247--25250
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =
[1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843]
Underfull \hbox (badness 2165) in paragraph at lines 25822--25827
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1844] [1845] [1846] [1847]
Underfull \hbox (badness 1867) in paragraph at lines 26032--26034
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 26048--26052
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-
[1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858]
[1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869]
[1870] [1871] [1872]
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[1874]
Underfull \hbox (badness 3514) in paragraph at lines 27700--27705
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1875] [1876] [1877] [1878]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 27970--27976
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1879]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 
[1880] [1881] [1882] [1883]
Underfull \hbox (badness 3514) in paragraph at lines 28203--28208
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1884]
Underfull \hbox (badness 3514) in paragraph at lines 28290--28295
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1885]
Underfull \hbox (badness 3514) in paragraph at lines 28355--28360
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1886] [1887]
Underfull \hbox (badness 3514) in paragraph at lines 28449--28454
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1888] [1889]
Underfull \hbox (badness 6691) in paragraph at lines 28541--28546
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897]
Underfull \hbox (badness 4024) in paragraph at lines 29028--29031
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907]
Underfull \hbox (badness 5431) in paragraph at lines 29631--29633
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1908] [1909] [1910]
Underfull \hbox (badness 5431) in paragraph at lines 29841--29844
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1911] [1912] [1913] [1914] [1915] [1916]
Underfull \hbox (badness 1337) in paragraph at lines 30156--30160
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1917] [1918]
Underfull \hbox (badness 1127) in paragraph at lines 30293--30296
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for
[1919] [1920] [1921]
Underfull \hbox (badness 1616) in paragraph at lines 30499--30502
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932]
[1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942]
Underfull \hbox (badness 3557) in paragraph at lines 31726--31730
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =
[1943] [1944] [1945]
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[1947] [1948]
Underfull \hbox (badness 1337) in paragraph at lines 32093--32097
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957]
Underfull \hbox (badness 1337) in paragraph at lines 32621--32625
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1958] [1959] [1960]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
[1961] [1962] [1963]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990
 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 
[1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex
Chapter 11.
[1969] [1970] [1971]
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Underfull \vbox (badness 10000) has occurred while \output is active [1973]
[1974] [1975] [1976]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1977] [1978] [1979])
(./tcltk-pkg.tex [1980]
Chapter 12.
[1981] [1982] [1983] [1984] [1985] [1986] [1987]
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Underfull \hbox (badness 1546) in paragraph at lines 672--679
[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning
[1990] [1991] [1992] [1993] [1994]
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[1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex
Chapter 13.
[2003]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[2004]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[2005] [2006]
Underfull \hbox (badness 1308) in paragraph at lines 288--301
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 288--301
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 288--301
[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and
[2007] [2008]
Underfull \hbox (badness 3039) in paragraph at lines 392--394
[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any
[2009]
Underfull \hbox (badness 1142) in paragraph at lines 464--468
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
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Underfull \hbox (badness 1014) in paragraph at lines 1220--1222
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 1637--1640
[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see
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ntifier (name{Rfn.GSC}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC}
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l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
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[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string
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[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :
[2085]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
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Chapter 14.
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing
[2128]
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[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

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\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
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X warning (ext4): destination with the same identifier (name{Rfn.clipboard}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2738 ... the Clipboard in MS Windows}{clipboard}
                                                   [2133]
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Underfull \hbox (badness 6842) in paragraph at lines 4046--4051
[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use

[2154]
Underfull \hbox (badness 1430) in paragraph at lines 4109--4113
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[2155]
Underfull \hbox (badness 1184) in paragraph at lines 4180--4196
[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

Underfull \hbox (badness 1019) in paragraph at lines 4180--4196
\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

Underfull \hbox (badness 1668) in paragraph at lines 4180--4196
\T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named
[2156] [2157]
Underfull \hbox (badness 10000) in paragraph at lines 4330--4332
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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[2169] [2170]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.format}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5109 ...mat Unordered and Ordered Lists}{format}
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ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
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                   \relax 
l.5109 ...mat Unordered and Ordered Lists}{format}
                                                   [2171] [2172] [2173]
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Underfull \hbox (badness 1622) in paragraph at lines 5632--5636
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
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Underfull \hbox (badness 1448) in paragraph at lines 6017--6022
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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Underfull \hbox (badness 1371) in paragraph at lines 6565--6567
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2193] [2194]
Underfull \hbox (badness 1502) in paragraph at lines 6654--6660
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 6654--6660
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2195] [2196]
Underfull \hbox (badness 10000) in paragraph at lines 6831--6840
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

Underfull \hbox (badness 3354) in paragraph at lines 6831--6840
\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .
[2197]
Underfull \hbox (badness 2150) in paragraph at lines 6893--6896
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[2198] [2199]
Underfull \hbox (badness 3118) in paragraph at lines 7032--7034
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2200] [2201] [2202]
Underfull \hbox (badness 1325) in paragraph at lines 7211--7215
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
[2203]
Underfull \hbox (badness 1424) in paragraph at lines 7303--7306
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2204]
Underfull \hbox (badness 3219) in paragraph at lines 7375--7382
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s
l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 7375--7382
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

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[][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
[2205] [2206]
Underfull \hbox (badness 1024) in paragraph at lines 7512--7515
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/
ptm/m/n/10 will

Underfull \hbox (badness 10000) in paragraph at lines 7545--7550
[][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
[2207]
Underfull \hbox (badness 5133) in paragraph at lines 7604--7608
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's
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Underfull \hbox (badness 10000) in paragraph at lines 8268--8270
[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
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Underfull \hbox (badness 2310) in paragraph at lines 9055--9060
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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Underfull \hbox (badness 1248) in paragraph at lines 9621--9625
[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2241]
Underfull \hbox (badness 1789) in paragraph at lines 9699--9701
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to
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Underfull \hbox (badness 1097) in paragraph at lines 10560--10563
[]\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case
[2255] [2256]
Underfull \hbox (badness 3000) in paragraph at lines 10696--10701
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 read.table[][][][]\T1/ptm/m/n/10 ;
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[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 write.table[][][][]\T1/ptm/m/n/10 ;
[2266]
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


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[]\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,
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\T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu
merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed
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[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

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 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
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Underfull \hbox (badness 2150) in paragraph at lines 12568--12570
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /
[2286] [2287] [2288] [2289]
Underfull \hbox (badness 10000) in paragraph at lines 12788--12792
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 12821--12827
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,
[3] [4] [5]
Underfull \hbox (badness 1178) in paragraph at lines 337--340
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues
[6] [7] [8] [9]
Underfull \hbox (badness 2556) in paragraph at lines 572--578
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',
[10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27]
[28] [29] [30]
Underfull \vbox (badness 3803) has occurred while \output is active [31]
[32] [33] [34] [35] [36]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[37] [38] [39] [40] [41] [42] [43] [44] [45] [46]
Underfull \hbox (badness 1721) in paragraph at lines 2926--2930
[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
[47] [48] [49] [50] [51] [52] [53]
Underfull \hbox (badness 2538) in paragraph at lines 3404--3407
[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,
[54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66]
Underfull \hbox (badness 10000) in paragraph at lines 4200--4202
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81]
[82] [83] [84] [85] [86] [87]
Underfull \hbox (badness 2521) in paragraph at lines 5551--5553
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[102] [103] [104] [105] [106] [107]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
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Underfull \hbox (badness 1303) in paragraph at lines 7730--7737
[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
[120]
Underfull \hbox (badness 2261) in paragraph at lines 7741--7746
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /
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Underfull \vbox (badness 10000) has occurred while \output is active [123]
[124] [125] [126] [127] [128] [129] [130] [131]
Underfull \hbox (badness 2096) in paragraph at lines 8474--8478
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[132] [133]
Underfull \hbox (badness 2351) in paragraph at lines 8589--8592
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
[134] [135] [136] [137] [138]
Underfull \hbox (badness 4479) in paragraph at lines 8906--8917
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
[139] [140] [141] [142] [143] [144]
Underfull \hbox (badness 1629) in paragraph at lines 9327--9339
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9327--9339
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
[145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156]
[157]
Underfull \hbox (badness 1178) in paragraph at lines 10193--10197
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
[158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169]
[170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181]
[182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193]
Underfull \hbox (badness 2744) in paragraph at lines 12524--12526
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
[194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205]
[206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217]
[218] [219] [220] [221] [222] [223] [224] [225]
Underfull \hbox (badness 2253) in paragraph at lines 14728--14730
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[226]
Underfull \hbox (badness 1490) in paragraph at lines 14763--14766
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
[227]
Underfull \hbox (badness 1565) in paragraph at lines 14845--14849
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and
[228]
Underfull \hbox (badness 4927) in paragraph at lines 14896--14898
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =
[229] [230]
Underfull \hbox (badness 1466) in paragraph at lines 15047--15050
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
[231] [232]
Underfull \hbox (badness 10000) in paragraph at lines 15178--15182
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15189--15192
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[233] [234] [235] [236] [237]
Underfull \hbox (badness 3965) in paragraph at lines 15484--15488
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[238] [239] [240] [241] [242] [243] [244]
Underfull \hbox (badness 5260) in paragraph at lines 15986--15986
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,
[245] [246] [247] [248] [249]
Underfull \hbox (badness 4429) in paragraph at lines 16276--16279
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[250] [251]
Underfull \hbox (badness 10000) in paragraph at lines 16383--16385
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,
[252]
Underfull \hbox (badness 2035) in paragraph at lines 16456--16460
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within
[253]
Underfull \vbox (badness 10000) has occurred while \output is active [254]
[255] [256] [257] [258] [259] [260] [261] [262]
Underfull \hbox (badness 2452) in paragraph at lines 17079--17083
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17079--17083
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
[263] [264]
Underfull \hbox (badness 1092) in paragraph at lines 17253--17258
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
[265] [266] [267] [268]
Underfull \hbox (badness 6741) in paragraph at lines 17506--17510
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
[269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279]
Underfull \vbox (badness 10000) has occurred while \output is active [280]
Underfull \vbox (badness 10000) has occurred while \output is active [281]
[282] [283] [284] [285] [286] [287] [288] [289] [290]
Underfull \hbox (badness 1769) in paragraph at lines 18979--18982
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[291] [292] [293] [294] [295]
Underfull \hbox (badness 10000) in paragraph at lines 19288--19290
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19294--19303
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[296] [297] [298] [299] [300] [301] [302] [303] [304]
Underfull \hbox (badness 1442) in paragraph at lines 19902--19904
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[305] [306]
Underfull \hbox (badness 2452) in paragraph at lines 19998--20024
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 19998--20024
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]
[307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 1248) in paragraph at lines 20395--20398
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[313] [314] [315] [316]
Underfull \hbox (badness 4739) in paragraph at lines 20658--20660
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328]
[329] [330] [331] [332] [333] [334] [335]
Underfull \hbox (badness 2469) in paragraph at lines 21816--21821
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[336] [337]
Underfull \hbox (badness 1675) in paragraph at lines 21903--21912
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21913--21926
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 21961--21964
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21961--21964
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by
[338] [339]
Underfull \hbox (badness 1014) in paragraph at lines 22095--22100
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352]
Underfull \hbox (badness 1264) in paragraph at lines 22942--22950
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[353]
Underfull \hbox (badness 4441) in paragraph at lines 22977--22980
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 5231) in paragraph at lines 23795--23797
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377]
[378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 6380) in paragraph at lines 24905--24911
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24905--24911
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]
[384] [385] [386] [387] [388] [389] [390] [391]
Underfull \hbox (badness 2790) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[392] [393] [394] [395] [396]
Underfull \hbox (badness 1194) in paragraph at lines 25746--25749
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[397] [398] [399]
Underfull \hbox (badness 2368) in paragraph at lines 25953--25959
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[400] [401] [402] [403] [404] [405]
Underfull \hbox (badness 10000) in paragraph at lines 26343--26346
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
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Underfull \hbox (badness 10000) in paragraph at lines 26971--26973
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[416] [417] [418] [419] [420] [421] [422]
Underfull \hbox (badness 2443) in paragraph at lines 27462--27470
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For
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Underfull \hbox (badness 1881) in paragraph at lines 27892--27895
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

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[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

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Underfull \hbox (badness 2142) in paragraph at lines 28058--28062
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28115--28120
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[432] [433] [434] [435]
Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28424--28427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

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[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

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[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
[436]
Underfull \hbox (badness 2529) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 28514--28517
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
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Underfull \hbox (badness 10000) in paragraph at lines 28932--28936
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
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Underfull \hbox (badness 10000) in paragraph at lines 29079--29082
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[445]
Underfull \hbox (badness 7925) in paragraph at lines 29160--29164
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29160--29164
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29165--29174
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
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[458] [459] [460] [461]
Underfull \hbox (badness 2726) in paragraph at lines 30179--30182
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
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Underfull \hbox (badness 1533) in paragraph at lines 31986--31989
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
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Underfull \hbox (badness 1163) in paragraph at lines 32157--32168
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
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[501]
Underfull \hbox (badness 6300) in paragraph at lines 32703--32705
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:
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[514] [515] [516] [517] [518]
Underfull \hbox (badness 10000) in paragraph at lines 33826--33830
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 33826--33830
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 33847--33849
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 33850--33854
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
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Underfull \hbox (badness 1655) in paragraph at lines 34452--34454
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
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[541] [542] [543] [544] [545] [546] [547]
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
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[560] [561] [562] [563]
Underfull \hbox (badness 3668) in paragraph at lines 36690--36694
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with
[564]
Underfull \hbox (badness 10000) in paragraph at lines 36781--36792
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?
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[589]
Underfull \hbox (badness 10000) in paragraph at lines 38413--38415
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
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Underfull \hbox (badness 2913) in paragraph at lines 38831--38835
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
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Underfull \hbox (badness 1072) in paragraph at lines 39077--39081
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
[600]
Underfull \hbox (badness 10000) in paragraph at lines 39082--39086
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39122--39128
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39122--39128
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39122--39128
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 39137--39144
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39137--39144
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39137--39144
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39137--39144
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[601] [602] [603] [604]
Underfull \hbox (badness 2644) in paragraph at lines 39372--39376
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an

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[617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628]
Underfull \hbox (badness 1158) in paragraph at lines 40900--40902
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
[629] [630] [631] [632] [633] [634] [635] [636] [637] [638]
Underfull \hbox (badness 1137) in paragraph at lines 41500--41506
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

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[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
[639] [640]
Underfull \hbox (badness 1616) in paragraph at lines 41638--41643
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
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[646] [647] [648] [649]
Underfull \hbox (badness 1472) in paragraph at lines 42184--42187
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
[650] [651] [652] [653]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 42396.

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Underfull \hbox (badness 10000) in paragraph at lines 43135--43139
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >
[665] [666] [667] [668] [669]
Underfull \hbox (badness 10000) in paragraph at lines 43494--43497
[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /
[670] [671] [672]
Underfull \hbox (badness 10000) in paragraph at lines 43678--43682
[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .

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Underfull \hbox (badness 10000) in paragraph at lines 44326--44329
[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /
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Underfull \hbox (badness 1990) in paragraph at lines 45242--45250
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 45242--45250
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708]
[709] [710] [711] [712] [713] [714] [715] [716] [717] [718]
Underfull \hbox (badness 1014) in paragraph at lines 46679--46682
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if
[719] [720]
Underfull \hbox (badness 2401) in paragraph at lines 46812--46816
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[721] [722]
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[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
[723] [724]
Underfull \hbox (badness 2111) in paragraph at lines 47024--47029
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.
[725] [726] [727]
Underfull \hbox (badness 4001) in paragraph at lines 47272--47274
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.
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Underfull \hbox (badness 5417) in paragraph at lines 47673--47677
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[735]
Underfull \hbox (badness 10000) in paragraph at lines 47734--47738
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named
[736]) (./compiler-pkg.tex
Chapter 2.
[737] [738] [739] [740]) (./datasets-pkg.tex
Chapter 3.
[741] [742] [743] [744] [745]
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[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
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Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524
 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
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[813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823])
(./grDevices-pkg.tex [824]
Chapter 4.
[825] [826] [827] [828] [829]
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[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in
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[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /
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\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[914]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,
[917]
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[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-
[928]
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[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space
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 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex
Chapter 5.
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 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
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[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),
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[1040 </build/r-base-4.4.1/library/graphics/help/figures/mai.pdf>]
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[1041 </build/r-base-4.4.1/library/graphics/help/figures/oma.pdf>] [1042]
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[][] 
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",
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l.9186 \HeaderA{units}{Graphical Units}{units}
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l.9186 \HeaderA{units}{Graphical Units}{units}
                                               [1103] [1104] [1105] [1106])
(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1195] [1196] [1197] [1198] [1199] [1200] [1201]
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1202] [1203]
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a
[1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214]
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[1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235])
(./methods-pkg.tex [1236]
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =
[1268] [1269] [1270] [1271] [1272]
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the
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[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
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[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",
[1290]
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[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


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[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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l.7234 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1338]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /
[1383]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388]
Chapter 8.

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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
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[1405] [1406] [1407] [1408] [1409] [1410]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the
[1411] [1412]) (./splines-pkg.tex
Chapter 9.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables
[1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423]
[1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex
Chapter 10.
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[1484]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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(amsmath)                 on input line 3670.

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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

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[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1577]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1604]
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[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
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estination with the same identifier (name{Rfn.hat}) has been already used, dupl
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                   \relax 
l.12053 \aliasA{hat}{influence.measures}{hat}
                                              [1620] [1621]
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[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =
[1632] [1633] [1634] [1635] [1636]
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[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
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[]\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

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[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

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[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms
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[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

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[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

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\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

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[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if
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 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

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 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col
[1753] [1754] [1755] [1756] [1757] [1758] [1759]
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[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

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[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson
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[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,
[1817]
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[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _
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[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

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\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1834]
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[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =
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[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

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[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-
[1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1875] [1876] [1877] [1878]
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 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1879]
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 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1884]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1885]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1886] [1887]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1888] [1889]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897]
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[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1908] [1909] [1910]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1917] [1918]
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[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for
[1919] [1920] [1921]
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1958] [1959] [1960]
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 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
[1961] [1962] [1963]
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 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 
[1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex
Chapter 11.
[1969] [1970] [1971]
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 (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1977] [1978] [1979])
(./tcltk-pkg.tex [1980]
Chapter 12.
[1981] [1982] [1983] [1984] [1985] [1986] [1987]
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[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning
[1990] [1991] [1992] [1993] [1994]
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[1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex
Chapter 13.
[2003]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[2004]
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[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and
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[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any
[2009]
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
[2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
[2024] [2025] [2026] [2027] [2028] [2029]
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see
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ntifier (name{Rfn.GSC}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC}
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l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
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[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string
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[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
[2074] [2075] [2076] [2077] [2078]
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=
[2079] [2080]
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[2081] [2082] [2083] [2084]
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :
[2085]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[2086] [2087] [2088] [2089]) (./utils-pkg.tex [2090]
Chapter 14.
[2091]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
[2102] [2103] [2104]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing
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[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

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\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
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[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use

[2154]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
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[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

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\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

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\T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named
[2156] [2157]
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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[2169] [2170]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.format}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5109 ...mat Unordered and Ordered Lists}{format}
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ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

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\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .
[2197]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s
l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
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[][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
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[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/
ptm/m/n/10 will

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[][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
[2207]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2241]
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
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[]\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case
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[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 read.table[][][][]\T1/ptm/m/n/10 ;
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[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 write.table[][][][]\T1/ptm/m/n/10 ;
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


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[]\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,
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\T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu
merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed
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[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

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 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /
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[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
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[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and
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\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
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[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of
[2301] [2302] [2303]
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[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
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[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/sl/10 ) []\T1/ptm/m/n/10 will not have

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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

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\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-
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\T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/sl/10 Rtools 
[]\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n
/10 which used
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[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup 
. org /

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\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to

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[][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
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[][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,
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[2342] [2343] [2344] [2345] [2346]) (./refman.ind [2347] [2348] [2349] [2350]
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[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 

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[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 

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[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 

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[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 
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(./refman.aux)

Package rerunfilecheck Warning: File `refman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


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 )
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Chapter 1.
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
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\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
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[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

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\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

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[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
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[3] [4] [5]
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
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[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[82] [83] [84] [85] [86] [87]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[102] [103] [104] [105] [106] [107]
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 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
[120]
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\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /
[121] [122]
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
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[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
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[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

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[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
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[157]
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[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
[227]
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and
[228]
Underfull \hbox (badness 4927) in paragraph at lines 14896--14898
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =
[229] [230]
Underfull \hbox (badness 1466) in paragraph at lines 15047--15050
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
[231] [232]
Underfull \hbox (badness 10000) in paragraph at lines 15178--15182
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15189--15192
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[233] [234] [235] [236] [237]
Underfull \hbox (badness 3965) in paragraph at lines 15484--15488
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[238] [239] [240] [241] [242] [243] [244]
Underfull \hbox (badness 5260) in paragraph at lines 15986--15986
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,
[245] [246] [247] [248] [249]
Underfull \hbox (badness 4429) in paragraph at lines 16276--16279
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[250] [251]
Underfull \hbox (badness 10000) in paragraph at lines 16383--16385
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,
[252]
Underfull \hbox (badness 2035) in paragraph at lines 16456--16460
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within
[253]
Underfull \vbox (badness 10000) has occurred while \output is active [254]
[255] [256] [257] [258] [259] [260] [261] [262]
Underfull \hbox (badness 2452) in paragraph at lines 17079--17083
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17079--17083
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
[263] [264]
Underfull \hbox (badness 1092) in paragraph at lines 17253--17258
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
[265] [266] [267] [268]
Underfull \hbox (badness 6741) in paragraph at lines 17506--17510
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
[269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279]
Underfull \vbox (badness 10000) has occurred while \output is active [280]
Underfull \vbox (badness 10000) has occurred while \output is active [281]
[282] [283] [284] [285] [286] [287] [288] [289] [290]
Underfull \hbox (badness 1769) in paragraph at lines 18979--18982
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[291] [292] [293] [294] [295]
Underfull \hbox (badness 10000) in paragraph at lines 19288--19290
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19294--19303
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[296] [297] [298] [299] [300] [301] [302] [303] [304]
Underfull \hbox (badness 1442) in paragraph at lines 19902--19904
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[305] [306]
Underfull \hbox (badness 2452) in paragraph at lines 19998--20024
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 19998--20024
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]
[307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 1248) in paragraph at lines 20395--20398
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[313] [314] [315] [316]
Underfull \hbox (badness 4739) in paragraph at lines 20658--20660
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328]
[329] [330] [331] [332] [333] [334] [335]
Underfull \hbox (badness 2469) in paragraph at lines 21816--21821
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[336] [337]
Underfull \hbox (badness 1675) in paragraph at lines 21903--21912
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21913--21926
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 21961--21964
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21961--21964
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by
[338] [339]
Underfull \hbox (badness 1014) in paragraph at lines 22095--22100
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352]
Underfull \hbox (badness 1264) in paragraph at lines 22942--22950
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[353]
Underfull \hbox (badness 4441) in paragraph at lines 22977--22980
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 5231) in paragraph at lines 23795--23797
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377]
[378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 6380) in paragraph at lines 24905--24911
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24905--24911
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]
[384] [385] [386] [387] [388] [389] [390] [391]
Underfull \hbox (badness 2790) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[392] [393] [394] [395] [396]
Underfull \hbox (badness 1194) in paragraph at lines 25746--25749
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[397] [398] [399]
Underfull \hbox (badness 2368) in paragraph at lines 25953--25959
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[400] [401] [402] [403] [404] [405]
Underfull \hbox (badness 10000) in paragraph at lines 26343--26346
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[406] [407] [408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 10000) in paragraph at lines 26971--26973
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[416] [417] [418] [419] [420] [421] [422]
Underfull \hbox (badness 2443) in paragraph at lines 27462--27470
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For
[423] [424] [425] [426] [427] [428] [429]
Underfull \hbox (badness 1881) in paragraph at lines 27892--27895
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27917--27919
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[430] [431]
Underfull \hbox (badness 2142) in paragraph at lines 28058--28062
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28115--28120
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[432] [433] [434] [435]
Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28424--28427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 28450--28452
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28496--28501
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
[436]
Underfull \hbox (badness 2529) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 28514--28517
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[437] [438] [439] [440] [441]
Underfull \vbox (badness 10000) has occurred while \output is active [442]
Underfull \hbox (badness 10000) in paragraph at lines 28932--28936
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[443] [444]
Underfull \hbox (badness 10000) in paragraph at lines 29079--29082
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[445]
Underfull \hbox (badness 7925) in paragraph at lines 29160--29164
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29160--29164
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29165--29174
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457]
[458] [459] [460] [461]
Underfull \hbox (badness 2726) in paragraph at lines 30179--30182
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473]
[474] [475] [476] [477] [478] [479] [480]
Underfull \vbox (badness 3803) has occurred while \output is active [481]
[482] [483] [484] [485] [486] [487] [488] [489]
Underfull \hbox (badness 1533) in paragraph at lines 31986--31989
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[490] [491] [492]
Underfull \hbox (badness 1163) in paragraph at lines 32157--32168
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[493] [494] [495] [496] [497] [498] [499]
Underfull \vbox (badness 3803) has occurred while \output is active [500]
[501]
Underfull \hbox (badness 6300) in paragraph at lines 32703--32705
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:
[502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513]
[514] [515] [516] [517] [518]
Underfull \hbox (badness 10000) in paragraph at lines 33826--33830
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 33826--33830
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 33847--33849
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

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[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
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[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
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[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with
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\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?
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[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
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\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
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[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
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[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

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[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

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\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

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\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

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[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

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\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

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\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

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\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
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[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an

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[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
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[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

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[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
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[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
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[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
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LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
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[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >
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[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /
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[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .

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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /
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[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

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\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if
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[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
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[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
[723] [724]
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\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.
[725] [726] [727]
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[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.
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[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[735]
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[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named
[736]) (./compiler-pkg.tex
Chapter 2.
[737] [738] [739] [740]) (./datasets-pkg.tex
Chapter 3.
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[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
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 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
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[813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823])
(./grDevices-pkg.tex [824]
Chapter 4.
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[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in
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[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as
[839] [840] [841] [842] [843] [844]
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /
[847] [848] [849] [850] [851]
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\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,
[858] [859]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,
[895] [896] [897] [898] [899] [900] [901]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.symbol}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.4872 \aliasA{symbol}{plotmath}{symbol}
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[907]
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[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[914]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[915] [916]
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,
[917]
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[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[918] [919] [920]
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,
[921] [922] [923] [924] [925] [926] [927]
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[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-
[928]
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[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space
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 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex
Chapter 5.
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 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
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[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),
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[1040 </build/r-base-4.4.1/library/graphics/help/figures/mai.pdf>]
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[1041 </build/r-base-4.4.1/library/graphics/help/figures/oma.pdf>] [1042]
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",
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(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1202] [1203]
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a
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[1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235])
(./methods-pkg.tex [1236]
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the
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[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
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[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",
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[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


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[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1339] [1340] [1341]
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /
[1383]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388]
Chapter 8.

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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
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[1405] [1406] [1407] [1408] [1409] [1410]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the
[1411] [1412]) (./splines-pkg.tex
Chapter 9.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables
[1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423]
[1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex
Chapter 10.
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515]
Underfull \hbox (badness 2556) in paragraph at lines 5470--5473
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For
[1516] [1517] [1518] [1519] [1520]
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Underfull \hbox (badness 2503) in paragraph at lines 5882--5886
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532]
[1533] [1534]
Underfull \hbox (badness 7081) in paragraph at lines 6674--6677
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6678--6680
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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Underfull \hbox (badness 10000) in paragraph at lines 7574--7577
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the
[1549] [1550] [1551] [1552] [1553] [1554]
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[1572] [1573] [1574] [1575] [1576]
Underfull \hbox (badness 2626) in paragraph at lines 9271--9274
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1577]
Underfull \hbox (badness 2503) in paragraph at lines 9378--9382
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588]
[1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598]
Underfull \hbox (badness 4518) in paragraph at lines 10733--10738
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1599] [1600] [1601] [1602] [1603]
Underfull \hbox (badness 2142) in paragraph at lines 11095--11098
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1604]
Underfull \hbox (badness 1253) in paragraph at lines 11114--11117
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,
[1605]
Underfull \hbox (badness 1708) in paragraph at lines 11176--11180
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1606] [1607] [1608] [1609] [1610] [1611]
Underfull \hbox (badness 1694) in paragraph at lines 11572--11575
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.12053 \aliasA{hat}{influence.measures}{hat}
                                              [1620] [1621]
Underfull \hbox (badness 1484) in paragraph at lines 12198--12200
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1622]
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[1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631]
Underfull \hbox (badness 10000) in paragraph at lines 12785--12787
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =
[1632] [1633] [1634] [1635] [1636]
Underfull \hbox (badness 2894) in paragraph at lines 13127--13131
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1637] [1638] [1639] [1640] [1641] [1642] [1643]
Underfull \hbox (badness 1496) in paragraph at lines 13555--13561
[]\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
[1644] [1645] [1646] [1647] [1648] [1649]
Underfull \hbox (badness 4518) in paragraph at lines 13958--13963
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659]
Underfull \hbox (badness 4518) in paragraph at lines 14620--14625
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1660] [1661] [1662]
Underfull \hbox (badness 6412) in paragraph at lines 14760--14764
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14767--14769
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is
[1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673]
[1674] [1675] [1676] [1677] [1678] [1679] [1680]
Underfull \hbox (badness 2503) in paragraph at lines 15843--15847
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688]
Underfull \hbox (badness 10000) in paragraph at lines 16356--16362
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16356--16362
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms
[1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699]
[1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710]
[1711] [1712] [1713] [1714] [1715]
Underfull \hbox (badness 1158) in paragraph at lines 18014--18017
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-
[1716] [1717]
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[1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730]
[1731] [1732]
Underfull \hbox (badness 1377) in paragraph at lines 19057--19062
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19062--19065
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19075--19079
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19075--19079
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19083--19087
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if
[1733] [1734] [1735]
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Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
[1737] [1738] [1739] [1740] [1741] [1742] [1743]
Underfull \hbox (badness 1337) in paragraph at lines 19773--19776
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752]
Underfull \hbox (badness 10000) in paragraph at lines 20242--20248
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col
[1753] [1754] [1755] [1756] [1757] [1758] [1759]
Underfull \hbox (badness 1194) in paragraph at lines 20669--20672
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1760] [1761] [1762] [1763] [1764] [1765]
Underfull \hbox (badness 2503) in paragraph at lines 21047--21050
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 21074--21076
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson
[1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776]
[1777] [1778] [1779] [1780] [1781] [1782] [1783]
Underfull \hbox (badness 10000) in paragraph at lines 22152--22158
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794]
[1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] [1803] [1804] [1805]
[1806] [1807] [1808]
Underfull \hbox (badness 1337) in paragraph at lines 23628--23634
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816]
Underfull \hbox (badness 1436) in paragraph at lines 24118--24121
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,
[1817]
Underfull \hbox (badness 10000) in paragraph at lines 24256--24257
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828]
[1829] [1830] [1831] [1832] [1833]
Underfull \hbox (badness 1824) in paragraph at lines 25226--25232
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 25226--25232
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1834]
Underfull \hbox (badness 10000) in paragraph at lines 25247--25250
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =
[1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843]
Underfull \hbox (badness 2165) in paragraph at lines 25822--25827
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1844] [1845] [1846] [1847]
Underfull \hbox (badness 1867) in paragraph at lines 26032--26034
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 26048--26052
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-
[1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858]
[1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869]
[1870] [1871] [1872]
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[1874]
Underfull \hbox (badness 3514) in paragraph at lines 27700--27705
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1875] [1876] [1877] [1878]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 27970--27976
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1879]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 
[1880] [1881] [1882] [1883]
Underfull \hbox (badness 3514) in paragraph at lines 28203--28208
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1884]
Underfull \hbox (badness 3514) in paragraph at lines 28290--28295
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1885]
Underfull \hbox (badness 3514) in paragraph at lines 28355--28360
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1886] [1887]
Underfull \hbox (badness 3514) in paragraph at lines 28449--28454
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1888] [1889]
Underfull \hbox (badness 6691) in paragraph at lines 28541--28546
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897]
Underfull \hbox (badness 4024) in paragraph at lines 29028--29031
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907]
Underfull \hbox (badness 5431) in paragraph at lines 29631--29633
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1908] [1909] [1910]
Underfull \hbox (badness 5431) in paragraph at lines 29841--29844
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1911] [1912] [1913] [1914] [1915] [1916]
Underfull \hbox (badness 1337) in paragraph at lines 30156--30160
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1917] [1918]
Underfull \hbox (badness 1127) in paragraph at lines 30293--30296
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for
[1919] [1920] [1921]
Underfull \hbox (badness 1616) in paragraph at lines 30499--30502
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932]
[1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942]
Underfull \hbox (badness 3557) in paragraph at lines 31726--31730
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =
[1943] [1944] [1945]
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[1947] [1948]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1958] [1959] [1960]
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 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
[1961] [1962] [1963]
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 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 
[1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex
Chapter 11.
[1969] [1970] [1971]
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                                                   [1977] [1978] [1979])
(./tcltk-pkg.tex [1980]
Chapter 12.
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[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning
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[1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex
Chapter 13.
[2003]

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[2004]
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[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
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[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any
[2009]
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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pre-vi-ous
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see
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[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
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[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :
[2085]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[2086] [2087] [2088] [2089]) (./utils-pkg.tex [2090]
Chapter 14.
[2091]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
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[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1
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\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
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[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1
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[2154]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
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[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
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\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If
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\T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

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\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .
[2197]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
[2203]
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s
l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
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[][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
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[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/
ptm/m/n/10 will

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[][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
[2207]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
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[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to
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[]\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case
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[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
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[46] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58]
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[77] [78] (Function and variable index) [79]
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[82] )
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></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr
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Output written on R-admin.pdf (85 pages, 475893 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdfetex)
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entering extended mode
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defuns, macros, cross references, insertions,
(/build/r-base-4.4.1/doc/manual/epsf.tex
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[-2]) [-3] (/build/r-base-4.4.1/doc/manual/R-admin.toc)
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[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
Chapter 3 [16] [17] [18] Chapter 4 [19] [20] [21]
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@textrm con' build, @texttt org.R-project.arm64.R.fw.pkg[]@textrm , @texttt org
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Chapter 5 [22] Chapter 6 [23]
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hods"[] 
[24] [25]
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s. No ad-di-
[26]
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lquadmath[] 
[27] [28]
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@textrm (avoiding @texttt autoconf[]@textrm 's de-fault @texttt -g[]@textrm ). 
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[29] [30] [31]
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 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A
[40] [41]
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[42] [43] [44] [45]
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4/jre[] 
[46] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58]
[59] [60] Appendix C [61] [62] [63] [64]
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[68] l.5238: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
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[70] [71] [72]
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[][][][][]@smalltt https: / / cran . r-project . org / bin / macosx / RMacOSX-F
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[73]
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[74] [75] [76]
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[77] [78] (Function and variable index) [79] (Concept index) [80]
(Environment variable index) [81] [82] )
(see the transcript file for additional information)pdfTeX warning (dest): name
{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not ex
ist, replaced by a fixed one

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texliv
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></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share
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f-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (87 pages, 519876 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
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page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/build/r-base-4.4.1/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-admin.vr
(/build/r-base-4.4.1/doc/manual/R-defs.texi
(/usr/share/texmf/tex/texinfo/txi-en.tex))
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x/updmap/pdftex.map}] [2] (/build/r-base-4.4.1/doc/manual/R-admin.toc [-1]
[-2]) [-3] (/build/r-base-4.4.1/doc/manual/R-admin.toc)
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[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
Chapter 3 [16] [17] [18] Chapter 4 [19] [20] [21]
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@textrm con' build, @texttt org.R-project.arm64.R.fw.pkg[]@textrm , @texttt org
.R-project.arm64.R.GUI.pkg[]@textrm ,
Chapter 5 [22] Chapter 6 [23]
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hods"[] 
[24] [25]
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s. No ad-di-
[26]
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lquadmath[] 
[27] [28]
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@textrm (avoiding @texttt autoconf[]@textrm 's de-fault @texttt -g[]@textrm ). 
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[29] [30] [31]
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Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A
[40] [41]
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[42] [43] [44] [45]
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4/jre[] 
[46] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58]
[59] [60] Appendix C [61] [62] [63] [64]
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[68] l.5238: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
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6.tar.gz[] 

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[][][]@smallrm See [][]@smalltt https: / / developer . apple . com / documentat
ion / xcode / notarizing_macos_software_before_distribution[][][]@smallrm .| 
[70] [71] [72]
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[][][][][]@smalltt https: / / cran . r-project . org / bin / macosx / RMacOSX-F
AQ . html # Which-BLAS-is-used-and-how-can-it-be-changed_003f[][][]| 
[73]
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@texttt OpenMathLib / OpenBLAS / releases[][][]@textrm ) by sym-link-ing @textt
t /opt/OpenBLAS/lib/libopenblas.dylib[]
[74] [75] [76]
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version-min=11"[] 
[77] [78] (Function and variable index) [79] (Concept index) [80]
(Environment variable index) [81] [82] )
(see the transcript file for additional information)pdfTeX warning (dest): name
{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not ex
ist, replaced by a fixed one

</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texliv
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Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4
[16] [17] [18] [19] [20] [21] [22] Chapter 5 [23] Chapter 6 [24] Chapter 7
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[15] Chapter 4 [16] [17] [18] [19] [20] [21] [22] Chapter 5 [23] Chapter 6
[24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31]
Appendix A [32] (Function and variable index) [33] [34] (Concept index)
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ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
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[3] [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14]
[15] Chapter 4 [16] [17] [18] [19] [20] [21] [22] Chapter 5 [23] Chapter 6
[24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31]
Appendix A [32] (Function and variable index) [33] [34] (Concept index)
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x/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16]
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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

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version 52.0[] 
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oc[] 
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[89] [90] [91] Chapter 2 [92] [93] [94] [95] [96] [97] [98]
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lename@texttt }[] @textrm and
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[109] [110] [111] Chapter 3 [112] [113] [114] [115] [116] [117] [118]
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lto_priv.0[] 
[119] Chapter 4 [120] [121] [122]
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[125] [126] [127] [128]
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[][][]@smallrm see [][]@smalltt https: / / llvm . org / devmtg / 2014-04 / PDFs
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o -fno-omit-frame-pointer -frtti[] 

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tandalone[] 

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ration [-Wlto-type-mismatch][] 

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ation [-Wlto-type-mismatch][] 

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ttt 1[] 

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ttt 1[] 

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 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
Chapter 5 [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150]
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 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

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 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[151] [152]
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 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[153] [154] [155] [156] [157] [158]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[159] [160] [161] [162] [163] [164] [165] [166] [167] [168]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[169] [170]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[171] [172] [173] [174] [175] [176] [177]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[178] [179]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[180]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[181]
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 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[182] [183]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[184]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[185]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
Chapter 6 [186] [187] [188] [189] [190] [191] [192] [193] [194]
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 []        @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[] 
[195] [196] [197] [198] [199] [200] [201] [202] [203] [204]
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 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[205] Warning: unbalanced parentheses in @def... [206] [207]
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 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[208] [209] [210] [211] [212] Chapter 7 [213] [214] Chapter 8 [215] [216]
[217]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[218]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[219] [220] [221] [222] [223] [224] [225] [226] [227]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [228]
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(Concept index) [229]
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[230] )
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x/updmap/pdftex.map}] [2] (/build/r-base-4.4.1/doc/manual/R-exts.toc [-1]
[-2] [-3] [-4]) [-5] (/build/r-base-4.4.1/doc/manual/R-exts.toc)
(/build/r-base-4.4.1/doc/manual/R-exts.toc) (Acknowledgements)
(/build/r-base-4.4.1/doc/manual/R-exts.aux) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16]
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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

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 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

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@texttt R_MAKEVARS_USER[]@textrm ,

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 @texttt ~/.R/Makevars.win64[]@textrm ,

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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

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 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

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@texttt R_MAKEVARS_USER[]@textrm ,

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 @texttt ~/.R/Makevars.win64[]@textrm ,
[17] [18] [19] [20]
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 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 

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 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 

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 []        @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[] 
[21] [22] [23] [24] [25] [26]
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 []@texttt $ pkg-config --exists 'libtiff-4 >= 4.1.0' --print-errors # check th
e status[] 
[27] [28] [29]
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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[30] [31] [32] [33] [34]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[35] [36]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[37]
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[][][]@smallrm Some changes are linked from [][]@smalltt https: / / isocpp . or
g / std / standing-documents /
[38] [39] [40]
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 []            @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX
17PICFLAGS)")[] 
[41] [42] [43]
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 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] [61]
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 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[] 
[62] [63] [64]
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 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 

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 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[] 
[65] [66] [67] [68] [69] [70]
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 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

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 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

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 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 

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 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[71] [72] [73] [74] [75]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[76] [77] [78]
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 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[] 
[79] [80]
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 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[81]
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 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 
[82]
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 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:'kdenestmlcvb' :: kdene
stmlcvb[] 

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 []@texttt warning: argument 1 value '18446744073709551615' exceeds maximum obj
ect[] 

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 []    @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), (
double) nelem);[] 
[83] [84] [85] [86] [87] [88]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[] 
[89] [90] [91] Chapter 2 [92] [93] [94] [95] [96] [97] [98]
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 @textrm is ig-nored when com-par-ing check out-put to ref-er-ence out-put (a
[99] [100] [101] [102] [103] [104] [105]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[106] [107] [108]
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 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt
 TRUE[] @textit and
[109] [110] [111] Chapter 3 [112] [113] [114] [115] [116] [117] [118]
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 []@texttt 5497      1.9783  R                        findVarLocInFrame.part.0.
lto_priv.0[] 
[119] Chapter 4 [120] [121] [122]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[123]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[124]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[125] [126] [127] [128]
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[][][]@smallrm see [][]@smalltt https: / / llvm . org / devmtg / 2014-04 / PDFs
 / LightningTalks / EuroLLVM%202014%20--%20container%20overflow .
[129] [130]
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 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 

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[]@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[131] [132]
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 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero -
fno-omit-frame-pointer[] 

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 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer
o -fno-omit-frame-pointer -frtti[] 

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 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/
libclang_rt.ubsan_standalone_cxx.a[] 

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 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s
tandalone[] 

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[]@textrm See [][]@texttt https: / / gcc . gnu . org / onlinedocs / gcc-10 . 1 
. 0 / gcc / Static-Analyzer-Options .
[133]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 

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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[134]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[135] [136] [137] [138]
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on [-Wlto-type-mismatch][] 
[139]
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ration [-Wlto-type-mismatch][] 

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 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar
ation [-Wlto-type-mismatch][] 

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ttt 1[] 

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ttt 1[] 

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 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
Chapter 5 [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150]
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 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

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 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[151] [152]
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 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[153] [154] [155] [156] [157] [158]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[159] [160] [161] [162] [163] [164] [165] [166] [167] [168]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[169] [170]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[171] [172] [173] [174] [175] [176] [177]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[178] [179]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[180]
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s)) {[] 
[181]
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 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[182] [183]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[184]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[185]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
Chapter 6 [186] [187] [188] [189] [190] [191] [192] [193] [194]
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 []        @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[] 
[195] [196] [197] [198] [199] [200] [201] [202] [203] [204]
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 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[205] Warning: unbalanced parentheses in @def... [206] [207]
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 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[208] [209] [210] [211] [212] Chapter 7 [213] [214] Chapter 8 [215] [216]
[217]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[218]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[219] [220] [221] [222] [223] [224] [225] [226] [227]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [228] [229] [230] [231] [232] [233]
(Concept index) [234] [235] [236] )
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Output written on R-exts.pdf (243 pages, 1081875 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdfetex)
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entering extended mode
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page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/build/r-base-4.4.1/doc/manual/epsf.tex
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) localization, formatting, and turning on texinfo input format.)
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x/updmap/pdftex.map}] [2] (/build/r-base-4.4.1/doc/manual/R-exts.toc [-1]
[-2] [-3] [-4]) [-5] (/build/r-base-4.4.1/doc/manual/R-exts.toc)
(/build/r-base-4.4.1/doc/manual/R-exts.toc) (Acknowledgements)
(/build/r-base-4.4.1/doc/manual/R-exts.aux) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16]
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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

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 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

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@texttt R_MAKEVARS_USER[]@textrm ,

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 @texttt ~/.R/Makevars.win64[]@textrm ,

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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

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 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_

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@texttt R_MAKEVARS_USER[]@textrm ,

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 @texttt ~/.R/Makevars.win64[]@textrm ,
[17] [18] [19] [20]
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 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 

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 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 

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 []        @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata.
rdb"))[] 
[21] [22] [23] [24] [25] [26]
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 []@texttt $ pkg-config --exists 'libtiff-4 >= 4.1.0' --print-errors # check th
e status[] 
[27] [28] [29]
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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[30] [31] [32] [33] [34]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[35] [36]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[37]
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[][][]@smallrm Some changes are linked from [][]@smalltt https: / / isocpp . or
g / std / standing-documents /
[38] [39] [40]
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 []            @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX
17PICFLAGS)")[] 
[41] [42] [43]
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 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] [61]
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 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s
pline)[] 
[62] [63] [64]
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 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 

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 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[] 
[65] [66] [67] [68] [69] [70]
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 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 

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 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 

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 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 

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 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[71] [72] [73] [74] [75]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[76] [77] [78]
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 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall
oc[] 
[79] [80]
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 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[81]
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 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__)
)[] 
[82]
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 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS:'kdenestmlcvb' :: kdene
stmlcvb[] 

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 []@texttt warning: argument 1 value '18446744073709551615' exceeds maximum obj
ect[] 

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 []    @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), (
double) nelem);[] 
[83] [84] [85] [86] [87] [88]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String
P)[] 
[89] [90] [91] Chapter 2 [92] [93] [94] [95] [96] [97] [98]
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 @textrm is ig-nored when com-par-ing check out-put to ref-er-ence out-put (a
[99] [100] [101] [102] [103] [104] [105]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[106] [107] [108]
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 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt
 TRUE[] @textit and
[109] [110] [111] Chapter 3 [112] [113] [114] [115] [116] [117] [118]
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 []@texttt 5497      1.9783  R                        findVarLocInFrame.part.0.
lto_priv.0[] 
[119] Chapter 4 [120] [121] [122]
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ns=)?[] 
[123]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[124]
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t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[125] [126] [127] [128]
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[][][]@smallrm see [][]@smalltt https: / / llvm . org / devmtg / 2014-04 / PDFs
 / LightningTalks / EuroLLVM%202014%20--%20container%20overflow .
[129] [130]
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 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 

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[]@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[131] [132]
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 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero -
fno-omit-frame-pointer[] 

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 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer
o -fno-omit-frame-pointer -frtti[] 

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 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/
libclang_rt.ubsan_standalone_cxx.a[] 

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tandalone[] 

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[]@textrm See [][]@texttt https: / / gcc . gnu . org / onlinedocs / gcc-10 . 1 
. 0 / gcc / Static-Analyzer-Options .
[133]
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pper bound of 0[] 

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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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cu)),[] 
[134]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[135] [136] [137] [138]
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on [-Wlto-type-mismatch][] 
[139]
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ration [-Wlto-type-mismatch][] 

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ation [-Wlto-type-mismatch][] 

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 []                                                                        @tex
ttt 1[] 

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ttt 1[] 

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 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
Chapter 5 [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150]
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 []                      @texttt double *w, int *iper, double *span, double *al
pha,[] 

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 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[151] [152]
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 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[153] [154] [155] [156] [157] [158]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[159] [160] [161] [162] [163] [164] [165] [166] [167] [168]
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SE");[] 
[169] [170]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[171] [172] [173] [174] [175] [176] [177]
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orry"[] 
[178] [179]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[180]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[181]
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alue));[] 
[182] [183]
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xit);[] 
[184]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[185]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
Chapter 6 [186] [187] [188] [189] [190] [191] [192] [193] [194]
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 []        @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term
inator[] 
[195] [196] [197] [198] [199] [200] [201] [202] [203] [204]
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 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na
.last, decreasing)[]@textrm .
[205] Warning: unbalanced parentheses in @def... [206] [207]
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 []                     @texttt void (*clean)(void *data, Rboolean jump), void 
*cdata,[] 
[208] [209] [210] [211] [212] Chapter 7 [213] [214] Chapter 8 [215] [216]
[217]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[218]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[219] [220] [221] [222] [223] [224] [225] [226] [227]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [228] [229] [230] [231] [232] [233]
(Concept index) [234] [235] [236] )
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r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att
ributes assigned to @textsl

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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
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[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
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l/images/QQ.pdf> [39] </build/r-base-4.4.1/doc/manual/images/ice.pdf> [40]
[41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51]
[52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64]
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[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101]
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[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13]
[14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24]
[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
Chapter 8 [35] [36] [37] </build/r-base-4.4.1/doc/manual/images/hist.pdf> </bui
ld/r-base-4.4.1/doc/manual/images/ecdf.pdf> [38] </build/r-base-4.4.1/doc/manua
l/images/QQ.pdf> [39] </build/r-base-4.4.1/doc/manual/images/ice.pdf> [40]
[41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51]
[52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64]
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[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101] [102] [103] Appendix E
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[25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34]
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[41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51]
[52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64]
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[86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95]
[96] [97] [98] Appendix C [99] [100] Appendix D [101] [102] [103] Appendix E
[104] [105] Appendix F [106] [107] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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atrix 1.2-6[] 

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ics with methods[] 

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[19] [20] [21] [22] [23] [24] Chapter 2 [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40]
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[41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49]
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xttt ~/Library/R/arch/x.y/library[]@textrm . 
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sed for

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LE_

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tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 9 [66] [67]
Chapter 10 [68] Chapter 11 [69] Chapter 12 [70] [71]
(Function and variable index) [72] [73]
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(Concept index) [74]
No file R-ints.cps.
[75] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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atrix 1.2-6[] 

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ics with methods[] 

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 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' 
(group)generic[] 

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 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19] [20] [21] [22] [23] [24] Chapter 2 [25]
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 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40]
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g glyphs (e.g., via
[41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49]
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@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
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xttt ~/Library/R/arch/x.y/library[]@textrm . 
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sed for

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LE_

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tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 9 [66] [67]
Chapter 10 [68] Chapter 11 [69] Chapter 12 [70] [71]
(Function and variable index) [72] [73] [74] [75] (Concept index) [76] [77] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
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sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share
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defuns, macros, cross references, insertions,
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atrix 1.2-6[] 

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 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 

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 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' 
(group)generic[] 

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 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[19] [20] [21] [22] [23] [24] Chapter 2 [25]
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 []    @texttt if (!is.character(x)) x <- structure(as.character(x), names = na
mes(x))[] 
[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40]
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g glyphs (e.g., via
[41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49]
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@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
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ib[]@textrm ,
[50]
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 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te
xttt ~/Library/R/arch/x.y/library[]@textrm . 
Chapter 8 [51] [52] [53] [54] [55]
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sed for

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LE_

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tchArgs = FALSE[] @textrm and
[56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 9 [66] [67]
Chapter 10 [68] Chapter 11 [69] Chapter 12 [70] [71]
(Function and variable index) [72] [73] [74] [75] (Concept index) [76] [77] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5
[28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40]
[41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49]
[50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59]
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Appendix A [61] [62] )
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[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5
[28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40]
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[50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
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\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
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[][]\T1/ptm/m/n/10 .
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[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
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[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
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[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

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69-12-31
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[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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 done: see
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Underfull \hbox (badness 1490) in paragraph at lines 14763--14766
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
[227]
Underfull \hbox (badness 1565) in paragraph at lines 14845--14849
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and
[228]
Underfull \hbox (badness 4927) in paragraph at lines 14896--14898
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =
[229] [230]
Underfull \hbox (badness 1466) in paragraph at lines 15047--15050
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
[231] [232]
Underfull \hbox (badness 10000) in paragraph at lines 15178--15182
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15189--15192
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[233] [234] [235] [236] [237]
Underfull \hbox (badness 3965) in paragraph at lines 15484--15488
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[238] [239] [240] [241] [242] [243] [244]
Underfull \hbox (badness 5260) in paragraph at lines 15986--15986
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,
[245] [246] [247] [248] [249]
Underfull \hbox (badness 4429) in paragraph at lines 16276--16279
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[250] [251]
Underfull \hbox (badness 10000) in paragraph at lines 16383--16385
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,
[252]
Underfull \hbox (badness 2035) in paragraph at lines 16456--16460
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within
[253]
Underfull \vbox (badness 10000) has occurred while \output is active [254]
[255] [256] [257] [258] [259] [260] [261] [262]
Underfull \hbox (badness 2452) in paragraph at lines 17079--17083
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17079--17083
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
[263] [264]
Underfull \hbox (badness 1092) in paragraph at lines 17253--17258
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
[265] [266] [267] [268]
Underfull \hbox (badness 6741) in paragraph at lines 17506--17510
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
[269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279]
Underfull \vbox (badness 10000) has occurred while \output is active [280]
Underfull \vbox (badness 10000) has occurred while \output is active [281]
[282] [283] [284] [285] [286] [287] [288] [289] [290]
Underfull \hbox (badness 1769) in paragraph at lines 18979--18982
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[291] [292] [293] [294] [295]
Underfull \hbox (badness 10000) in paragraph at lines 19288--19290
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19294--19303
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[296] [297] [298] [299] [300] [301] [302] [303] [304]
Underfull \hbox (badness 1442) in paragraph at lines 19902--19904
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[305] [306]
Underfull \hbox (badness 2452) in paragraph at lines 19998--20024
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 19998--20024
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]
[307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 1248) in paragraph at lines 20395--20398
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[313] [314] [315] [316]
Underfull \hbox (badness 4739) in paragraph at lines 20658--20660
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328]
[329] [330] [331] [332] [333] [334] [335]
Underfull \hbox (badness 2469) in paragraph at lines 21816--21821
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[336] [337]
Underfull \hbox (badness 1675) in paragraph at lines 21903--21912
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21913--21926
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 21961--21964
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21961--21964
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by
[338] [339]
Underfull \hbox (badness 1014) in paragraph at lines 22095--22100
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352]
Underfull \hbox (badness 1264) in paragraph at lines 22942--22950
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[353]
Underfull \hbox (badness 4441) in paragraph at lines 22977--22980
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 5231) in paragraph at lines 23795--23797
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377]
[378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 6380) in paragraph at lines 24905--24911
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24905--24911
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]
[384] [385] [386] [387] [388] [389] [390] [391]
Underfull \hbox (badness 2790) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[392] [393] [394] [395] [396]
Underfull \hbox (badness 1194) in paragraph at lines 25746--25749
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[397] [398] [399]
Underfull \hbox (badness 2368) in paragraph at lines 25953--25959
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[400] [401] [402] [403] [404] [405]
Underfull \hbox (badness 10000) in paragraph at lines 26343--26346
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[406] [407] [408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 10000) in paragraph at lines 26971--26973
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[416] [417] [418] [419] [420] [421] [422]
Underfull \hbox (badness 2443) in paragraph at lines 27462--27470
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For
[423] [424] [425] [426] [427] [428] [429]
Underfull \hbox (badness 1881) in paragraph at lines 27892--27895
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27917--27919
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[430] [431]
Underfull \hbox (badness 2142) in paragraph at lines 28058--28062
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28115--28120
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[432] [433] [434] [435]
Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28424--28427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 28450--28452
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28496--28501
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
[436]
Underfull \hbox (badness 2529) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 28514--28517
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
[437] [438] [439] [440] [441]
Underfull \vbox (badness 10000) has occurred while \output is active [442]
Underfull \hbox (badness 10000) in paragraph at lines 28932--28936
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[443] [444]
Underfull \hbox (badness 10000) in paragraph at lines 29079--29082
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[445]
Underfull \hbox (badness 7925) in paragraph at lines 29160--29164
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29160--29164
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29165--29174
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457]
[458] [459] [460] [461]
Underfull \hbox (badness 2726) in paragraph at lines 30179--30182
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473]
[474] [475] [476] [477] [478] [479] [480]
Underfull \vbox (badness 3803) has occurred while \output is active [481]
[482] [483] [484] [485] [486] [487] [488] [489]
Underfull \hbox (badness 1533) in paragraph at lines 31986--31989
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[490] [491] [492]
Underfull \hbox (badness 1163) in paragraph at lines 32157--32168
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[493] [494] [495] [496] [497] [498] [499]
Underfull \vbox (badness 3803) has occurred while \output is active [500]
[501]
Underfull \hbox (badness 6300) in paragraph at lines 32703--32705
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:
[502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513]
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[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

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[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

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[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

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[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
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[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
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[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with
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\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?
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[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
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\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
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[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
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[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

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[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

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\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

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\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

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[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

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\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

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\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

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\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
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[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an

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[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
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[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

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[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
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[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
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[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
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LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
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[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >
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[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /
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[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .

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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /
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[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

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\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if
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[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
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[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
[723] [724]
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\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.
[725] [726] [727]
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[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.
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[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[735]
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[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named
[736]) (./compiler-pkg.tex
Chapter 2.
[737] [738] [739] [740]) (./datasets-pkg.tex
Chapter 3.
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[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
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 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
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[813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823])
(./grDevices-pkg.tex [824]
Chapter 4.
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[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in
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[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /
[847] [848] [849] [850] [851]
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\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,
[895] [896] [897] [898] [899] [900] [901]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.symbol}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.4872 \aliasA{symbol}{plotmath}{symbol}
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[907]
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[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[914]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,
[917]
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[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[918] [919] [920]
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-
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[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space
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 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex
Chapter 5.
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 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
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[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),
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[1040 </build/r-base-4.4.1/library/graphics/help/figures/mai.pdf>]
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[1041 </build/r-base-4.4.1/library/graphics/help/figures/oma.pdf>] [1042]
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[][] 
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",
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                                               [1103] [1104] [1105] [1106])
(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1202] [1203]
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a
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[1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235])
(./methods-pkg.tex [1236]
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the
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[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
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[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",
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[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


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[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1339] [1340] [1341]
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /
[1383]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388]
Chapter 8.

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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
[1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404]
[1405] [1406] [1407] [1408] [1409] [1410]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the
[1411] [1412]) (./splines-pkg.tex
Chapter 9.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables
[1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423]
[1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex
Chapter 10.
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[1440] [1441] [1442]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472]
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[1484]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1485] [1486]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3670.

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Underfull \hbox (badness 3989) in paragraph at lines 4816--4823
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515]
Underfull \hbox (badness 2556) in paragraph at lines 5470--5473
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For
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Underfull \hbox (badness 2503) in paragraph at lines 5882--5886
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532]
[1533] [1534]
Underfull \hbox (badness 7081) in paragraph at lines 6674--6677
[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6678--6680
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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Underfull \hbox (badness 10000) in paragraph at lines 7574--7577
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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Underfull \hbox (badness 2626) in paragraph at lines 9271--9274
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1577]
Underfull \hbox (badness 2503) in paragraph at lines 9378--9382
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588]
[1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598]
Underfull \hbox (badness 4518) in paragraph at lines 10733--10738
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1599] [1600] [1601] [1602] [1603]
Underfull \hbox (badness 2142) in paragraph at lines 11095--11098
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1604]
Underfull \hbox (badness 1253) in paragraph at lines 11114--11117
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,
[1605]
Underfull \hbox (badness 1708) in paragraph at lines 11176--11180
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1606] [1607] [1608] [1609] [1610] [1611]
Underfull \hbox (badness 1694) in paragraph at lines 11572--11575
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.12053 \aliasA{hat}{influence.measures}{hat}
                                              [1620] [1621]
Underfull \hbox (badness 1484) in paragraph at lines 12198--12200
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1622]
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[1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631]
Underfull \hbox (badness 10000) in paragraph at lines 12785--12787
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =
[1632] [1633] [1634] [1635] [1636]
Underfull \hbox (badness 2894) in paragraph at lines 13127--13131
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1637] [1638] [1639] [1640] [1641] [1642] [1643]
Underfull \hbox (badness 1496) in paragraph at lines 13555--13561
[]\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
[1644] [1645] [1646] [1647] [1648] [1649]
Underfull \hbox (badness 4518) in paragraph at lines 13958--13963
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659]
Underfull \hbox (badness 4518) in paragraph at lines 14620--14625
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1660] [1661] [1662]
Underfull \hbox (badness 6412) in paragraph at lines 14760--14764
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14767--14769
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is
[1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673]
[1674] [1675] [1676] [1677] [1678] [1679] [1680]
Underfull \hbox (badness 2503) in paragraph at lines 15843--15847
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688]
Underfull \hbox (badness 10000) in paragraph at lines 16356--16362
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16356--16362
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms
[1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699]
[1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710]
[1711] [1712] [1713] [1714] [1715]
Underfull \hbox (badness 1158) in paragraph at lines 18014--18017
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-
[1716] [1717]
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Underfull \hbox (badness 1377) in paragraph at lines 19057--19062
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19062--19065
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19075--19079
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19075--19079
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19083--19087
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if
[1733] [1734] [1735]
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Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
[1737] [1738] [1739] [1740] [1741] [1742] [1743]
Underfull \hbox (badness 1337) in paragraph at lines 19773--19776
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752]
Underfull \hbox (badness 10000) in paragraph at lines 20242--20248
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col
[1753] [1754] [1755] [1756] [1757] [1758] [1759]
Underfull \hbox (badness 1194) in paragraph at lines 20669--20672
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1760] [1761] [1762] [1763] [1764] [1765]
Underfull \hbox (badness 2503) in paragraph at lines 21047--21050
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 21074--21076
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson
[1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776]
[1777] [1778] [1779] [1780] [1781] [1782] [1783]
Underfull \hbox (badness 10000) in paragraph at lines 22152--22158
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794]
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[1806] [1807] [1808]
Underfull \hbox (badness 1337) in paragraph at lines 23628--23634
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816]
Underfull \hbox (badness 1436) in paragraph at lines 24118--24121
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,
[1817]
Underfull \hbox (badness 10000) in paragraph at lines 24256--24257
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828]
[1829] [1830] [1831] [1832] [1833]
Underfull \hbox (badness 1824) in paragraph at lines 25226--25232
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 25226--25232
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1834]
Underfull \hbox (badness 10000) in paragraph at lines 25247--25250
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =
[1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843]
Underfull \hbox (badness 2165) in paragraph at lines 25822--25827
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1844] [1845] [1846] [1847]
Underfull \hbox (badness 1867) in paragraph at lines 26032--26034
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 26048--26052
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-
[1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858]
[1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869]
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[1874]
Underfull \hbox (badness 3514) in paragraph at lines 27700--27705
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1875] [1876] [1877] [1878]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

Underfull \hbox (badness 3514) in paragraph at lines 27970--27976
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1879]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 
[1880] [1881] [1882] [1883]
Underfull \hbox (badness 3514) in paragraph at lines 28203--28208
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1884]
Underfull \hbox (badness 3514) in paragraph at lines 28290--28295
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1885]
Underfull \hbox (badness 3514) in paragraph at lines 28355--28360
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1886] [1887]
Underfull \hbox (badness 3514) in paragraph at lines 28449--28454
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1888] [1889]
Underfull \hbox (badness 6691) in paragraph at lines 28541--28546
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897]
Underfull \hbox (badness 4024) in paragraph at lines 29028--29031
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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Underfull \hbox (badness 5431) in paragraph at lines 29631--29633
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1908] [1909] [1910]
Underfull \hbox (badness 5431) in paragraph at lines 29841--29844
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1911] [1912] [1913] [1914] [1915] [1916]
Underfull \hbox (badness 1337) in paragraph at lines 30156--30160
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1917] [1918]
Underfull \hbox (badness 1127) in paragraph at lines 30293--30296
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for
[1919] [1920] [1921]
Underfull \hbox (badness 1616) in paragraph at lines 30499--30502
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =
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e-sis, must be one of
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e-sis, must be one of
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 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
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 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 
[1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex
Chapter 11.
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(./tcltk-pkg.tex [1980]
Chapter 12.
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[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning
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[1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex
Chapter 13.
[2003]

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[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
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o ren-der each of the 12 types

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ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
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ne to use. Over-rides any
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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pre-vi-ous
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[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
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ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see
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[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
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 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
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Chapter 14.
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
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\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
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[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
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et to a path to a cer-tifi-cate bun-dle file, usu-ally named
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

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\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
[2203]
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s
l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
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[][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
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[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/
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[][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
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Writing index file fullrefman.idx
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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc
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(/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd) [1] [2] [3]
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(./base-pkg.tex
Chapter 1.
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It

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\T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base

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[]\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base

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\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As

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[]\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by []
\T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/
n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ',
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/
zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z
i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p
tm/m/n/10 ; fur-ther,
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[]\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE,
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
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\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
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[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
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[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

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[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
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[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
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[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
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[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

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[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
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[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,
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[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within
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[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

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\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
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[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
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\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
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[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

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[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
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[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
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[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

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[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]
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[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[336] [337]
Underfull \hbox (badness 1675) in paragraph at lines 21903--21912
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21913--21926
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 21961--21964
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21961--21964
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by
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Underfull \hbox (badness 1014) in paragraph at lines 22095--22100
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352]
Underfull \hbox (badness 1264) in paragraph at lines 22942--22950
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[353]
Underfull \hbox (badness 4441) in paragraph at lines 22977--22980
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 5231) in paragraph at lines 23795--23797
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377]
[378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 6380) in paragraph at lines 24905--24911
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24905--24911
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]
[384] [385] [386] [387] [388] [389] [390] [391]
Underfull \hbox (badness 2790) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[392] [393] [394] [395] [396]
Underfull \hbox (badness 1194) in paragraph at lines 25746--25749
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[397] [398] [399]
Underfull \hbox (badness 2368) in paragraph at lines 25953--25959
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[400] [401] [402] [403] [404] [405]
Underfull \hbox (badness 10000) in paragraph at lines 26343--26346
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[406] [407] [408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 10000) in paragraph at lines 26971--26973
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[416] [417] [418] [419] [420] [421] [422]
Underfull \hbox (badness 2443) in paragraph at lines 27462--27470
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For
[423] [424] [425] [426] [427] [428] [429]
Underfull \hbox (badness 1881) in paragraph at lines 27892--27895
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27917--27919
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[430] [431]
Underfull \hbox (badness 2142) in paragraph at lines 28058--28062
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28115--28120
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[432] [433] [434] [435]
Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28424--28427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 28450--28452
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28496--28501
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
[436]
Underfull \hbox (badness 2529) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

Underfull \hbox (badness 7203) in paragraph at lines 28514--28517
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
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Underfull \hbox (badness 10000) in paragraph at lines 28932--28936
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
[443] [444]
Underfull \hbox (badness 10000) in paragraph at lines 29079--29082
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[445]
Underfull \hbox (badness 7925) in paragraph at lines 29160--29164
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

Underfull \hbox (badness 1253) in paragraph at lines 29160--29164
[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

Underfull \hbox (badness 2521) in paragraph at lines 29165--29174
[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
[446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457]
[458] [459] [460] [461]
Underfull \hbox (badness 2726) in paragraph at lines 30179--30182
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
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[474] [475] [476] [477] [478] [479] [480]
Underfull \vbox (badness 3803) has occurred while \output is active [481]
[482] [483] [484] [485] [486] [487] [488] [489]
Underfull \hbox (badness 1533) in paragraph at lines 31986--31989
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[490] [491] [492]
Underfull \hbox (badness 1163) in paragraph at lines 32157--32168
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
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[501]
Underfull \hbox (badness 6300) in paragraph at lines 32703--32705
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:
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[514] [515] [516] [517] [518]
Underfull \hbox (badness 10000) in paragraph at lines 33826--33830
[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 33826--33830
[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

Underfull \hbox (badness 3557) in paragraph at lines 33847--33849
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 33850--33854
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
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[522] [523] [524] [525] [526] [527] [528]
Underfull \hbox (badness 1655) in paragraph at lines 34452--34454
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
[529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540]
[541] [542] [543] [544] [545] [546] [547]
Underfull \hbox (badness 2261) in paragraph at lines 35655--35660
[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
[548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559]
[560] [561] [562] [563]
Underfull \hbox (badness 3668) in paragraph at lines 36690--36694
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with
[564]
Underfull \hbox (badness 10000) in paragraph at lines 36781--36792
\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?
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[577] [578] [579] [580] [581] [582] [583] [584] [585] [586] [587] [588]
[589]
Underfull \hbox (badness 10000) in paragraph at lines 38413--38415
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[590] [591] [592] [593] [594] [595] [596]
Underfull \hbox (badness 2913) in paragraph at lines 38831--38835
\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
[597] [598] [599]
Underfull \hbox (badness 1072) in paragraph at lines 39077--39081
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
[600]
Underfull \hbox (badness 10000) in paragraph at lines 39082--39086
[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39122--39128
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39122--39128
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39122--39128
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 39137--39144
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39137--39144
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 39137--39144
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39137--39144
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[601] [602] [603] [604]
Underfull \hbox (badness 2644) in paragraph at lines 39372--39376
[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an

[605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616]
[617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628]
Underfull \hbox (badness 1158) in paragraph at lines 40900--40902
[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
[629] [630] [631] [632] [633] [634] [635] [636] [637] [638]
Underfull \hbox (badness 1137) in paragraph at lines 41500--41506
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

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[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
[639] [640]
Underfull \hbox (badness 1616) in paragraph at lines 41638--41643
[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
[641] [642] [643] [644]
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[646] [647] [648] [649]
Underfull \hbox (badness 1472) in paragraph at lines 42184--42187
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
[650] [651] [652] [653]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 42396.

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Underfull \hbox (badness 10000) in paragraph at lines 43135--43139
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >
[665] [666] [667] [668] [669]
Underfull \hbox (badness 10000) in paragraph at lines 43494--43497
[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /
[670] [671] [672]
Underfull \hbox (badness 10000) in paragraph at lines 43678--43682
[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .

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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /
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[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

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\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if
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[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
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[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
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\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.
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[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.
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[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[735]
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[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named
[736]) (./compiler-pkg.tex
Chapter 2.
[737] [738] [739] [740]) (./datasets-pkg.tex
Chapter 3.
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[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
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 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
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[813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823])
(./grDevices-pkg.tex [824]
Chapter 4.
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[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in
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[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /
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\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
[914]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,
[917]
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[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-
[928]
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[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space
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 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex
Chapter 5.
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 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
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[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),
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[1040 </build/r-base-4.4.1/library/graphics/help/figures/mai.pdf>]
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
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Chapter 6.

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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1195] [1196] [1197] [1198] [1199] [1200] [1201]
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1202] [1203]
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a
[1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214]
[1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225]
[1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235])
(./methods-pkg.tex [1236]
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the
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[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
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[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",
[1290]
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[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


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[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a
[1314] [1315]
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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                   \relax 
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l.7228 \aliasA{Complex}{S4groupGeneric}{Complex}
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l.7233 \aliasA{Ops}{S4groupGeneric}{Ops}
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l.7234 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1338]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1339] [1340] [1341]
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally
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[1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363]
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[1381] [1382]
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /
[1383]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
[1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404]
[1405] [1406] [1407] [1408] [1409] [1410]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the
[1411] [1412]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables
[1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423]
[1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex
Chapter 10.
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[1440] [1441] [1442]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461]
[1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472]
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[1484]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1485] [1486]

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(amsmath)                 on input line 3670.

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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[1533] [1534]
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[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

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[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1577]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1604]
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[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,
[1605]
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1606] [1607] [1608] [1609] [1610] [1611]
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
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estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
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                   \relax 
l.12053 \aliasA{hat}{influence.measures}{hat}
                                              [1620] [1621]
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[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1622]
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[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =
[1632] [1633] [1634] [1635] [1636]
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[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
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Underfull \hbox (badness 1496) in paragraph at lines 13555--13561
[]\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
[1644] [1645] [1646] [1647] [1648] [1649]
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1660] [1661] [1662]
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[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

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[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 16356--16362
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

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[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms
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[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

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[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

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\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19083--19087
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if
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 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

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 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752]
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\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col
[1753] [1754] [1755] [1756] [1757] [1758] [1759]
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[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

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[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson
[1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776]
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[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816]
Underfull \hbox (badness 1436) in paragraph at lines 24118--24121
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,
[1817]
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[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828]
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[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

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\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1834]
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[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =
[1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843]
Underfull \hbox (badness 2165) in paragraph at lines 25822--25827
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1844] [1845] [1846] [1847]
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[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

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[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-
[1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858]
[1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869]
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[1874]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1875] [1876] [1877] [1878]
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 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1879]
Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030
 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 
[1880] [1881] [1882] [1883]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1884]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1885]
Underfull \hbox (badness 3514) in paragraph at lines 28355--28360
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1886] [1887]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1888] [1889]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897]
Underfull \hbox (badness 4024) in paragraph at lines 29028--29031
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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Underfull \hbox (badness 5431) in paragraph at lines 29631--29633
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1908] [1909] [1910]
Underfull \hbox (badness 5431) in paragraph at lines 29841--29844
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1911] [1912] [1913] [1914] [1915] [1916]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1917] [1918]
Underfull \hbox (badness 1127) in paragraph at lines 30293--30296
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for
[1919] [1920] [1921]
Underfull \hbox (badness 1616) in paragraph at lines 30499--30502
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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[1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942]
Underfull \hbox (badness 3557) in paragraph at lines 31726--31730
[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =
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[1947] [1948]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957]
Underfull \hbox (badness 1337) in paragraph at lines 32621--32625
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1958] [1959] [1960]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
[1961] [1962] [1963]
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 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 
[1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex
Chapter 11.
[1969] [1970] [1971]
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 (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1977] [1978] [1979])
(./tcltk-pkg.tex [1980]
Chapter 12.
[1981] [1982] [1983] [1984] [1985] [1986] [1987]
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[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning
[1990] [1991] [1992] [1993] [1994]
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[1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex
Chapter 13.
[2003]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[2004]
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[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[2005] [2006]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and
[2007] [2008]
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[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any
[2009]
Underfull \hbox (badness 1142) in paragraph at lines 464--468
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
[2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020]
[2021] [2022]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
[2023]
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
[2024] [2025] [2026] [2027] [2028] [2029]
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and
[2030] [2031]
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see
[2032] [2033] [2034] [2035]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.GSC}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       pdfTeX warning (ext4): destination with 
the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [2036] [2037] [2038]
[2039] [2040] [2041] [2042]
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[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of
[2043] [2044]
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string
[2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055]
[2056] [2057] [2058] [2059]
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[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
-tor of links, as re-turned by
[2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] [2069] [2070]
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[2071] [2072] [2073]
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
[2074] [2075] [2076] [2077] [2078]
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=
[2079] [2080]
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :
[2085]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
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Chapter 14.
[2091]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
, this func-tion is in-voked for its side ef-fect of up-dat-ing
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[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1
/ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print

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\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
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X warning (ext4): destination with the same identifier (name{Rfn.clipboard}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2738 ... the Clipboard in MS Windows}{clipboard}
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[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1
0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use

[2154]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[2155]
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[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
/m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS

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\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If
 it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari-

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\T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named
[2156] [2157]
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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[2169] [2170]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.format}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5109 ...mat Unordered and Ordered Lists}{format}
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ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to
[2193] [2194]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2195] [2196]
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,

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\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
[][][]()[]\T1/ptm/m/n/10 .
[2197]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[2198] [2199]
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2200] [2201] [2202]
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack
ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able
[2203]
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2204]
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s
l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-

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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by

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[][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[]
\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen
tly

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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p
tm/m/n/10 al-ways works pro-vided the pack-age con-tains no
[2205] [2206]
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[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available.
packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/
ptm/m/n/10 will

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[][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
[]\T1/ptm/m/n/10 ,
[2207]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt
m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2241]
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic;
 de-faults to
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[]\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al
so be used on Win-dows, in which case
[2255] [2256]
Underfull \hbox (badness 3000) in paragraph at lines 10696--10701
[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 read.table[][][][]\T1/ptm/m/n/10 ;
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[][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c
onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt
m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/
sl/10 write.table[][][][]\T1/ptm/m/n/10 ;
[2266]
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for


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[]\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C
LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/
10 ,
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\T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu
merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed
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[]\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is 
not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-
ment vari-able

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 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /
[2286] [2287] [2288] [2289]
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[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 
is now taken from the en-vi-ron-ment vari-able

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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2290]
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\T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin
ce 2018). Ei-ther set
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If

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[]\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do
ws and
[2293]
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\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\
T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via
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[]\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate
d spe-cially: the value is taken from the cur-rent set-ting of
[2301] [2302] [2303]
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[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
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[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
m/sl/10 ) []\T1/ptm/m/n/10 will not have

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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[2309] [2310] [2311] [2312] [2313] [2314] [2315]
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
ult) then the avail-able syn-tax ob-jects are con-sulted in turn,

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\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n
/10 com-po-nent matches (as a reg-exp) the file name. Ob-
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\T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/sl/10 Rtools 
[]\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n
/10 which used
[2319]
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[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set 
to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup 
. org /

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\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a
nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to

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[][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [
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\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
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[]\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n
/10 only. This reads the
[120]
Underfull \hbox (badness 2261) in paragraph at lines 7741--7746
\T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1
/zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen
et . net / ~conrad / software /
[121] [122]
Underfull \vbox (badness 10000) has occurred while \output is active [123]
[124] [125] [126] [127] [128] [129] [130] [131]
Underfull \hbox (badness 2096) in paragraph at lines 8474--8478
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[132] [133]
Underfull \hbox (badness 2351) in paragraph at lines 8589--8592
[][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac
-cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10
 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t
able[][][][]\T1/ptm/m/n/10 ,
[134] [135] [136] [137] [138]
Underfull \hbox (badness 4479) in paragraph at lines 8906--8917
[][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f
rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p
tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names),
[139] [140] [141] [142] [143] [144]
Underfull \hbox (badness 1629) in paragraph at lines 9327--9339
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times

Underfull \hbox (badness 2875) in paragraph at lines 9327--9339
[]\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19
69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19
69-12-31
[145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156]
[157]
Underfull \hbox (badness 1178) in paragraph at lines 10193--10197
[]\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and
 atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names 
(see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de-
[158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169]
[170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181]
[182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193]
Underfull \hbox (badness 2744) in paragraph at lines 12524--12526
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
[194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205]
[206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217]
[218] [219] [220] [221] [222] [223] [224] [225]
Underfull \hbox (badness 2253) in paragraph at lines 14728--14730
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[226]
Underfull \hbox (badness 1490) in paragraph at lines 14763--14766
[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
[227]
Underfull \hbox (badness 1565) in paragraph at lines 14845--14849
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym-
bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][]
[]\T1/ptm/m/n/10 , and
[228]
Underfull \hbox (badness 4927) in paragraph at lines 14896--14898
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/zi4/m/n/10 fsep =
[229] [230]
Underfull \hbox (badness 1466) in paragraph at lines 15047--15050
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T
1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and
[231] [232]
Underfull \hbox (badness 10000) in paragraph at lines 15178--15182
[][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 15189--15192
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[233] [234] [235] [236] [237]
Underfull \hbox (badness 3965) in paragraph at lines 15484--15488
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[238] [239] [240] [241] [242] [243] [244]
Underfull \hbox (badness 5260) in paragraph at lines 15986--15986
[]\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/
ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma
ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 ,
[245] [246] [247] [248] [249]
Underfull \hbox (badness 4429) in paragraph at lines 16276--16279
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[250] [251]
Underfull \hbox (badness 10000) in paragraph at lines 16383--16385
[]\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/zi4/m/n/10 .format.zeros(*,
[252]
Underfull \hbox (badness 2035) in paragraph at lines 16456--16460
[]\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1
0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 
R \T1/ptm/m/n/10 3.2.0: for use within
[253]
Underfull \vbox (badness 10000) has occurred while \output is active [254]
[255] [256] [257] [258] [259] [260] [261] [262]
Underfull \hbox (badness 2452) in paragraph at lines 17079--17083
[]\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron
-ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 17079--17083
\T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond
s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_
GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and
[263] [264]
Underfull \hbox (badness 1092) in paragraph at lines 17253--17258
[][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t
er the DLL has been loaded us-ing
[265] [266] [267] [268]
Underfull \hbox (badness 6741) in paragraph at lines 17506--17510
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
[269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279]
Underfull \vbox (badness 10000) has occurred while \output is active [280]
Underfull \vbox (badness 10000) has occurred while \output is active [281]
[282] [283] [284] [285] [286] [287] [288] [289] [290]
Underfull \hbox (badness 1769) in paragraph at lines 18979--18982
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[291] [292] [293] [294] [295]
Underfull \hbox (badness 10000) in paragraph at lines 19288--19290
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /

Underfull \hbox (badness 2088) in paragraph at lines 19294--19303
[]\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T
1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu /
[296] [297] [298] [299] [300] [301] [302] [303] [304]
Underfull \hbox (badness 1442) in paragraph at lines 19902--19904
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see
[305] [306]
Underfull \hbox (badness 2452) in paragraph at lines 19998--20024
[][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 
as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt
m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi
4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][]
\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 5726) in paragraph at lines 19998--20024
[][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en
vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma
trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][]
[307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 1248) in paragraph at lines 20395--20398
[]\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "
complex"[]\T1/ptm/m/n/10 ,
[313] [314] [315] [316]
Underfull \hbox (badness 4739) in paragraph at lines 20658--20660
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328]
[329] [330] [331] [332] [333] [334] [335]
Underfull \hbox (badness 2469) in paragraph at lines 21816--21821
[]\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T
1/ptm/m/n/10 and
[336] [337]
Underfull \hbox (badness 1675) in paragraph at lines 21903--21912
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3189) in paragraph at lines 21913--21926
[]\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini-
tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set
 or empty, the

Underfull \hbox (badness 10000) in paragraph at lines 21961--21964
[]\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid-

Underfull \hbox (badness 4752) in paragraph at lines 21961--21964
\T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may 
be opened by
[338] [339]
Underfull \hbox (badness 1014) in paragraph at lines 22095--22100
[]\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i
n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p
tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if
[340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351]
[352]
Underfull \hbox (badness 1264) in paragraph at lines 22942--22950
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[353]
Underfull \hbox (badness 4441) in paragraph at lines 22977--22980
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/
ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10
 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 ,
[354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365]
Underfull \hbox (badness 5231) in paragraph at lines 23795--23797
[]\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm
/m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) ==
[366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377]
[378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 6380) in paragraph at lines 24905--24911
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-

Underfull \hbox (badness 1472) in paragraph at lines 24905--24911
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ 
_ Utils$[][]
[384] [385] [386] [387] [388] [389] [390] [391]
Underfull \hbox (badness 2790) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes
-sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 25418--25421
[]\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti
ll mes-sages, so can be sup-pressed by
[392] [393] [394] [395] [396]
Underfull \hbox (badness 1194) in paragraph at lines 25746--25749
[]\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1
0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/
m/n/10 . It calls
[397] [398] [399]
Underfull \hbox (badness 2368) in paragraph at lines 25953--25959
[]\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list, i.e.,
[400] [401] [402] [403] [404] [405]
Underfull \hbox (badness 10000) in paragraph at lines 26343--26346
[]\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[406] [407] [408] [409] [410] [411] [412] [413] [414] [415]
Underfull \hbox (badness 10000) in paragraph at lines 26971--26973
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in%
[416] [417] [418] [419] [420] [421] [422]
Underfull \hbox (badness 2443) in paragraph at lines 27462--27470
\T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob
-jects. For
[423] [424] [425] [426] [427] [428] [429]
Underfull \hbox (badness 1881) in paragraph at lines 27892--27895
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 27917--27919
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[430] [431]
Underfull \hbox (badness 2142) in paragraph at lines 28058--28062
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts
cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 28115--28120
[]\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\
T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[432] [433] [434] [435]
Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 28411--28417
\T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 5878) in paragraph at lines 28424--28427
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p
tm/m/n/10 and

Underfull \hbox (badness 2689) in paragraph at lines 28450--28452
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 28496--28501
[]\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
[436]
Underfull \hbox (badness 2529) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm
/m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-

Underfull \hbox (badness 2512) in paragraph at lines 28502--28513
\T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u
se and

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[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
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Underfull \hbox (badness 10000) in paragraph at lines 28932--28936
\T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU
N(X[arrayindex.x], Y[arrayindex.y],
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Underfull \hbox (badness 10000) in paragraph at lines 29079--29082
[]\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex
t=s,
[445]
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[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve
c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [
]\T1/ptm/m/n/10 cor-re-sponds to

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[][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 ,
 which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) 
and [][][]\T1/zi4/m/n/10 class[][][]

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[]\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st
ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt
m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s,
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Underfull \hbox (badness 2726) in paragraph at lines 30179--30182
[]\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
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Underfull \hbox (badness 1533) in paragraph at lines 31986--31989
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
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[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
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[501]
Underfull \hbox (badness 6300) in paragraph at lines 32703--32705
[]\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr
it-ing R Ex-ten-sions' man-ual:
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[514] [515] [516] [517] [518]
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[]\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,

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[]\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions 
of the matches are also re-turned by name.

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[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /

Underfull \hbox (badness 1122) in paragraph at lines 33850--33854
[]\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi
4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m
/n/10 https : / / www . pcre . org /
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Underfull \hbox (badness 1655) in paragraph at lines 34452--34454
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1
/ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
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Underfull \hbox (badness 3668) in paragraph at lines 36690--36694
[]\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use with
[564]
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\T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par
sing-[]c-[]command-[]line-[]arguments ?
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[589]
Underfull \hbox (badness 10000) in paragraph at lines 38413--38415
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
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\T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur-
rently un-der eval-u-a-tion, ex-ceeds the limit set by
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Underfull \hbox (badness 1072) in paragraph at lines 39077--39081
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
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[]\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/
m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi
4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 39122--39128
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 39122--39128
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 39122--39128
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3009) in paragraph at lines 39137--39144
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read

Underfull \hbox (badness 1038) in paragraph at lines 39137--39144
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

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\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 39137--39144
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
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[]\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an

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[]\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil
e.type) []\T1/ptm/m/n/10 for the de-fault
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Underfull \hbox (badness 1137) in paragraph at lines 41500--41506
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails

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[]\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
[639] [640]
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[]\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al
ikes, pro-vided only the POSIX op-tions
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Underfull \hbox (badness 1472) in paragraph at lines 42184--42187
[]\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
[650] [651] [652] [653]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/n' instead on input line 42396.

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Underfull \hbox (badness 10000) in paragraph at lines 43135--43139
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca
n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4
/m/sl/10 length(bin) >
[665] [666] [667] [668] [669]
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[][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$https : / / developer . r-[]project . org /
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Underfull \hbox (badness 10000) in paragraph at lines 43678--43682
[][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s
l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb
ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer .

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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[]
[] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time
-[]zones /
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Underfull \hbox (badness 1990) in paragraph at lines 45242--45250
[]\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an
y er-rors that oc-cur dur-ing the eval-u-a-tion. If

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\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
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[709] [710] [711] [712] [713] [714] [715] [716] [717] [718]
Underfull \hbox (badness 1014) in paragraph at lines 46679--46682
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me
-di-ately, even if
[719] [720]
Underfull \hbox (badness 2401) in paragraph at lines 46812--46816
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][]("
warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[721] [722]
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[]\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/
ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
[723] [724]
Underfull \hbox (badness 2111) in paragraph at lines 47024--47029
\T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10
 is not empty, these are used as col-umn names.
[725] [726] [727]
Underfull \hbox (badness 4001) in paragraph at lines 47272--47274
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer 
.
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Underfull \hbox (badness 5417) in paragraph at lines 47673--47677
[]\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re
ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[735]
Underfull \hbox (badness 10000) in paragraph at lines 47734--47738
[]\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d
ard' reg-exps, in-clud-ing el-e-ments named
[736]) (./compiler-pkg.tex
Chapter 2.
[737] [738] [739] [740]) (./datasets-pkg.tex
Chapter 3.
[741] [742] [743] [744] [745]
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[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
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 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
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[813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823])
(./grDevices-pkg.tex [824]
Chapter 4.
[825] [826] [827] [828] [829]
Underfull \hbox (badness 2221) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[]
\T1/ptm/m/n/10 , with iden-ti-cal mean-ing to

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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1
/ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1
/ptm/m/n/10 in
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[][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a
nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b
e spec-i-fied as
[839] [840] [841] [842] [843] [844]
Underfull \hbox (badness 5175) in paragraph at lines 1227--1229
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[845] [846]
Underfull \hbox (badness 2512) in paragraph at lines 1346--1348
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar
chive . org / web / 20190613001950 / http : / / efg2 . com /
[847] [848] [849] [850] [851]
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\T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and 
[][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []
\T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10
 and

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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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Underfull \hbox (badness 1325) in paragraph at lines 2074--2084
[]\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png
alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/
m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm
/m/n/10 ,
[858] [859]
Underfull \hbox (badness 10000) in paragraph at lines 2186--2188
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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Underfull \hbox (badness 6758) in paragraph at lines 2374--2377
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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\T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt
m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H
elvetica-Narrow"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1
/zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See

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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [
]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti
ca-Narrow"[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P
alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1
/zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/
ptm/m/n/10 ,
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[]\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/
zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu /
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[]\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi
4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , []
\T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n
/10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/
10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and 
Re-play-ing the Graph-
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[]\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (
red/green/blue) into HSV space
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 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro
blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/
zi4/m/n/9 ):[] 
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C
JK lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s
l/10 "AvantGarde"[]\T1/ptm/m/n/10 ,
[949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex
Chapter 5.
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 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
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[][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor
ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1
/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10
 "n" []\T1/ptm/m/n/10 to sup-press and see also
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
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[]\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc
aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c
h),
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[1040 </build/r-base-4.4.1/library/graphics/help/figures/mai.pdf>]
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[1041 </build/r-base-4.4.1/library/graphics/help/figures/oma.pdf>] [1042]
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m
/sl/10 par(c("font.sub",

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[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa
r(c("font.lab", "cex.lab",
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(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an
d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal
-cu-la-tion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/
ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T
1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi
ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/
m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[]\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/
10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or
[1202] [1203]
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[]\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o
b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 
and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a
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(./methods-pkg.tex [1236]
Chapter 7.
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[]\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te
nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s
l/10 "package"[]\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n
/10 can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/
m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/zi4/m/sl/10 where =
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] []
\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10
 cre-ate ob-jects of class
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[]\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi
4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10
 slot of the re-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 
re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1
0 re-stores the
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[]\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string
 name of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The
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[] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi
tude = "numeric",
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[]\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character"
), contains =
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[]\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10
 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar


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[]\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [
][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u
sed by
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[]\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m
/n/10 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe
fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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                                                 [1338]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1339] [1340] [1341]
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[]\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o
nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions,
 typ-i-cally
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Underfull \hbox (badness 1158) in paragraph at lines 10490--10493
[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains /
[1383]
Underfull \hbox (badness 1852) in paragraph at lines 10568--10572
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388]
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z
i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' []
[]RNG[][][]: see
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Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
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[1405] [1406] [1407] [1408] [1409] [1410]
Underfull \hbox (badness 3386) in paragraph at lines 1400--1403
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10
 .Random.seed []\T1/ptm/m/n/10 when the
[1411] [1412]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables
[1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423]
[1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex
Chapter 10.
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Underfull \hbox (badness 1412) in paragraph at lines 901--903
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 
lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo
r
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Underfull \hbox (badness 2503) in paragraph at lines 1389--1392
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461]
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[1484]
Underfull \hbox (badness 2503) in paragraph at lines 3557--3560
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1485] [1486]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3670.

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Underfull \hbox (badness 3989) in paragraph at lines 4816--4823
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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Underfull \hbox (badness 2556) in paragraph at lines 5470--5473
[]\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[
]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 
"filter"[]\T1/ptm/m/n/10 . For
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Underfull \hbox (badness 2503) in paragraph at lines 5882--5886
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532]
[1533] [1534]
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[]\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c
an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in
g method

Underfull \hbox (badness 10000) in paragraph at lines 6678--6680
[]\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-
gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
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Underfull \hbox (badness 10000) in paragraph at lines 7574--7577
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the
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Underfull \hbox (badness 2626) in paragraph at lines 9271--9274
[]\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\
T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1577]
Underfull \hbox (badness 2503) in paragraph at lines 9378--9382
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 4518) in paragraph at lines 10733--10738
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1599] [1600] [1601] [1602] [1603]
Underfull \hbox (badness 2142) in paragraph at lines 11095--11098
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1604]
Underfull \hbox (badness 1253) in paragraph at lines 11114--11117
[]\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t
o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac
h IWLS it-er-a-tion. Hence,
[1605]
Underfull \hbox (badness 1708) in paragraph at lines 11176--11180
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1606] [1607] [1608] [1609] [1610] [1611]
Underfull \hbox (badness 1694) in paragraph at lines 11572--11575
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.12053 \aliasA{hat}{influence.measures}{hat}
                                              [1620] [1621]
Underfull \hbox (badness 1484) in paragraph at lines 12198--12200
[]\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists
 mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1622]
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Underfull \hbox (badness 10000) in paragraph at lines 12785--12787
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d
efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit =
[1632] [1633] [1634] [1635] [1636]
Underfull \hbox (badness 2894) in paragraph at lines 13127--13131
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1637] [1638] [1639] [1640] [1641] [1642] [1643]
Underfull \hbox (badness 1496) in paragraph at lines 13555--13561
[]\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
[1644] [1645] [1646] [1647] [1648] [1649]
Underfull \hbox (badness 4518) in paragraph at lines 13958--13963
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659]
Underfull \hbox (badness 4518) in paragraph at lines 14620--14625
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1660] [1661] [1662]
Underfull \hbox (badness 6412) in paragraph at lines 14760--14764
[]\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int
erpolate", statistics =

Underfull \hbox (badness 1199) in paragraph at lines 14767--14769
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is
[1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673]
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Underfull \hbox (badness 2503) in paragraph at lines 15843--15847
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,
[1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688]
Underfull \hbox (badness 10000) in paragraph at lines 16356--16362
[]\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to

Underfull \hbox (badness 1867) in paragraph at lines 16356--16362
[]\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model.
response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\
T1/ptm/m/n/10 sums any terms
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Underfull \hbox (badness 1158) in paragraph at lines 18014--18017
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T
1/ptm/m/n/10 as the data ar-gu-ment. The ac-
[1716] [1717]
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Underfull \hbox (badness 1377) in paragraph at lines 19057--19062
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 19062--19065
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 2343) in paragraph at lines 19075--19079
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce

Underfull \hbox (badness 3471) in paragraph at lines 19075--19079
\T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) +
 reltol) []\T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 19083--19087
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\
T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if
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 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 

Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
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Underfull \hbox (badness 1337) in paragraph at lines 19773--19776
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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Underfull \hbox (badness 10000) in paragraph at lines 20242--20248
\T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty
 = cook.lty, col = cook.col, text.col
[1753] [1754] [1755] [1756] [1757] [1758] [1759]
Underfull \hbox (badness 1194) in paragraph at lines 20669--20672
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
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Underfull \hbox (badness 2503) in paragraph at lines 21047--21050
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
[]\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3919) in paragraph at lines 21074--21076
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" 
[]\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson
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Underfull \hbox (badness 10000) in paragraph at lines 22152--22158
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar
[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n
/10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
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Underfull \hbox (badness 1337) in paragraph at lines 23628--23634
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816]
Underfull \hbox (badness 1436) in paragraph at lines 24118--24121
\T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t
o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2,
[1817]
Underfull \hbox (badness 10000) in paragraph at lines 24256--24257
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o
rg / wiki / Quantile # Estimating _ quantiles _ from _ a _
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Underfull \hbox (badness 1824) in paragraph at lines 25226--25232
[]\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are 
first re-placed by al-ter-

Underfull \hbox (badness 1033) in paragraph at lines 25226--25232
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1834]
Underfull \hbox (badness 10000) in paragraph at lines 25247--25250
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = 
runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] =
[1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843]
Underfull \hbox (badness 2165) in paragraph at lines 25822--25827
[]\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T
1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1
/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 ,
[1844] [1845] [1846] [1847]
Underfull \hbox (badness 1867) in paragraph at lines 26032--26034
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to

Underfull \hbox (badness 10000) in paragraph at lines 26048--26052
[]\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb
ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <-
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 

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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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 []            \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=
1e-11, nDcentral=TRUE), trace=TRUE)[] 
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ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp
ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[]
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate
 only for
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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[]\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non-
[]\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re
ct []\T1/zi4/m/sl/10 interval =
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
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 []      \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep
s = getOption("ts.eps"), ...)[] 
[1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex
Chapter 11.
[1969] [1970] [1971]
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l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1977] [1978] [1979])
(./tcltk-pkg.tex [1980]
Chapter 12.
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[]\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-
ing any Tk or Tcl com-mand by sim-ply run-ning
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[1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex
Chapter 13.
[2003]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
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[2004]
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[]\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil
l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b
ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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[]\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format
InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 
, []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi
s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and
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[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi
ne to use. Over-rides any
[2009]
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and 
[]\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm
/m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10
 CRAN_current_db []\T1/ptm/m/n/10 and
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see
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[]\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1
/ptm/m/n/10 searches for strings match-ing the pat-tern of
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\T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10
 . Char-ac-ter string
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[]\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 
5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-
tion
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[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over []
\T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type =
=
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
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[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z
i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 :
[2085]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[2086] [2087] [2088] [2089]) (./utils-pkg.tex [2090]
Chapter 14.
[2091]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m
/n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,

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[]\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10
 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the
[2102] [2103] [2104]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 
"OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1
/zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
[]\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 
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[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1
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\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
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[]\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1
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[2154]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
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[]\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm
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\T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If
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\T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s
et to a path to a cer-tifi-cate bun-dle file, usu-ally named
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d
ownload.file[][][] []\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
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[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method 
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
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\T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1
/ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html
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l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download.
packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][]
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[]\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/
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onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m
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[]\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault)
, [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/
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[]\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa
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\T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n
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\T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/sl/10 Rtools 
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to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men
t vari-able

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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
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. org /

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\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
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[]\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a
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[][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s
l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [
]\T1/ptm/m/n/10 and

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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
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[][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/
sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download
.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][
][]\T1/ptm/m/n/10 ,
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Output written on fullrefman.pdf (2462 pages, 6665396 bytes).
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gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/build/r-base-4.4.1"' \
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installing 'sysdata.rda'
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all.R is unchanged
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make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/stats4'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk/src'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk/src'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/tcltk'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
make[6]: Entering directory '/build/r-base-4.4.1/src/library/parallel/src'
make[7]: Entering directory '/build/r-base-4.4.1/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/build/r-base-4.4.1/src/library/parallel/src'
make[6]: Leaving directory '/build/r-base-4.4.1/src/library/parallel/src'
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Entering directory '/build/r-base-4.4.1/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/parallel'
make[4]: Entering directory '/build/r-base-4.4.1/src/library/base'
make[4]: Leaving directory '/build/r-base-4.4.1/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/build/r-base-4.4.1/src/library'
make[2]: Leaving directory '/build/r-base-4.4.1/src'
make[2]: Entering directory '/build/r-base-4.4.1/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/build/r-base-4.4.1/tests'
make[2]: Entering directory '/build/r-base-4.4.1/src/library'
building/updating vignettes for package 'grid' ...
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
building/updating vignettes for package 'stats' ...
processing 'reshape.Rnw'
make[2]: Leaving directory '/build/r-base-4.4.1/src/library'
make[1]: Leaving directory '/build/r-base-4.4.1'
touch make-indep-stamp
 fakeroot debian/rules binary
*** check ***
xvfb-run make check-all
make[1]: Entering directory '/build/r-base-4.4.1'
make[2]: Entering directory '/build/r-base-4.4.1/tests'
make[3]: Entering directory '/build/r-base-4.4.1/tests'
make[4]: Entering directory '/build/r-base-4.4.1/tests/Examples'
Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK
Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... NOTE
  1076,1077d1075
  < Warning in as.POSIXct.POSIXlt(from) :
  <   datetimes before 1902 may not be accurate: warns once per session
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... NOTE
  7529,7530c7529,7530
  < 	Fisher's Exact Test for Count Data hybrid using asym.chisq. iff
  < 	(exp=5, perc=80, Emin=1)
  ---
  > 	Fisher's Exact Test for Count Data hybrid using asym.chisq. iff (exp=5,
  > 	perc=80, Emin=1)
  14219,14220c14219
  < 	4-sample test for equality of proportions without continuity
  < 	correction
  ---
  > 	4-sample test for equality of proportions without continuity correction
  14249,14250c14248
  < 	4-sample test for equality of proportions without continuity
  < 	correction
  ---
  > 	4-sample test for equality of proportions without continuity correction
Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
make[4]: Leaving directory '/build/r-base-4.4.1/tests/Examples'
make[3]: Leaving directory '/build/r-base-4.4.1/tests'
make[3]: Entering directory '/build/r-base-4.4.1/tests'
running strict specific tests
make[4]: Entering directory '/build/r-base-4.4.1/tests'
running code in 'eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK
running code in 'simple-true.R' ... OK
  comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK
running code in 'arith-true.R' ... OK
  comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK
running code in 'arith.R' ... OK
  comparing 'arith.Rout' to './arith.Rout.save' ... OK
running code in 'lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK
running code in 'ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK
running code in 'method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK
running code in 'any-all.R' ... OK
  comparing 'any-all.Rout' to './any-all.Rout.save' ... OK
running code in 'structure.R' ... OK
  comparing 'structure.Rout' to './structure.Rout.save' ... OK
running code in 'd-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK
make[4]: Leaving directory '/build/r-base-4.4.1/tests'
running sloppy specific tests
make[4]: Entering directory '/build/r-base-4.4.1/tests'
running code in 'complex.R' ... OK
  comparing 'complex.Rout' to './complex.Rout.save' ... OK
running code in 'print-tests.R' ... OK
  comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK
running code in 'lapack.R' ... OK
  comparing 'lapack.Rout' to './lapack.Rout.save' ... OK
running code in 'datasets.R' ... OK
  comparing 'datasets.Rout' to './datasets.Rout.save' ... OK
running code in 'datetime.R' ... OK
  comparing 'datetime.Rout' to './datetime.Rout.save' ...11,13d10
< Warning message:
< In as.POSIXlt.POSIXct(x, tz) :
<   datetimes before 1902 may not be accurate: warns once per session
 OK
running code in 'iec60559.R' ... OK
  comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK
make[4]: Leaving directory '/build/r-base-4.4.1/tests'
make[4]: Entering directory '/build/r-base-4.4.1/tests'
checking Sys.timezone ...
make[5]: Entering directory '/build/r-base-4.4.1/tests'
running code in 'timezone.R' ... OK
make[5]: Leaving directory '/build/r-base-4.4.1/tests'
make[4]: Leaving directory '/build/r-base-4.4.1/tests'
make[3]: Leaving directory '/build/r-base-4.4.1/tests'
make[3]: Entering directory '/build/r-base-4.4.1/tests'
running regression tests ...
make[4]: Entering directory '/build/r-base-4.4.1/tests'
running code in 'array-subset.R' ... OK
running code in 'classes-methods.R' ... OK
running code in 'reg-tests-1a.R' ... OK
running code in 'reg-tests-1b.R' ... OK
running code in 'reg-tests-1c.R' ... OK
running code in 'reg-tests-1d.R' ...make[4]: *** [Makefile.common:120: reg-tests-1d.Rout] Error 1
make[4]: Leaving directory '/build/r-base-4.4.1/tests'
make[3]: *** [Makefile.common:322: test-Reg] Error 2
make[3]: Leaving directory '/build/r-base-4.4.1/tests'
make[2]: *** [Makefile.common:193: test-all-basics] Error 1
make[2]: Leaving directory '/build/r-base-4.4.1/tests'
make[1]: *** [Makefile:310: check-all] Error 2
make[1]: Leaving directory '/build/r-base-4.4.1'
make: [debian/rules:409: check-stamp] Error 2 (ignored)
touch check-stamp
*** install-arch ***
dh_testdir
dh_testroot
dh_prep -a
dh_installdirs -A
/build/r-base-4.4.1/debian/r-base-core
/usr/bin/make DESTDIR=/build/r-base-4.4.1/debian/r-base-core install
make[1]: Entering directory '/build/r-base-4.4.1'
make[2]: Entering directory '/build/r-base-4.4.1/m4'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/build/r-base-4.4.1/m4'
make[2]: Entering directory '/build/r-base-4.4.1/tools'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/build/r-base-4.4.1/tools'
make[2]: Entering directory '/build/r-base-4.4.1/doc'
installing doc ...
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/doc
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory '/build/r-base-4.4.1/doc/html'
installing doc/html ...
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory '/build/r-base-4.4.1/doc/html'
make[3]: Entering directory '/build/r-base-4.4.1/doc/manual'
installing doc/manual ...
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/doc/manual
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/doc/manual/images
make[3]: Leaving directory '/build/r-base-4.4.1/doc/manual'
make[2]: Leaving directory '/build/r-base-4.4.1/doc'
make[2]: Entering directory '/build/r-base-4.4.1/etc'
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory '/build/r-base-4.4.1/etc'
make[2]: Entering directory '/build/r-base-4.4.1/share'
installing share ...
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/dictionaries
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/Rd
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/Rd/macros
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory '/build/r-base-4.4.1/share'
make[2]: Entering directory '/build/r-base-4.4.1/src'
make[3]: Entering directory '/build/r-base-4.4.1/src/scripts'
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory '/build/r-base-4.4.1/src/scripts'
make[3]: Entering directory '/build/r-base-4.4.1/src/include'
make[4]: Entering directory '/build/r-base-4.4.1/src/include/R_ext'
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory '/build/r-base-4.4.1/src/include/R_ext'
make[3]: Leaving directory '/build/r-base-4.4.1/src/include'
make[3]: Entering directory '/build/r-base-4.4.1/src/extra'
make[4]: Entering directory '/build/r-base-4.4.1/src/extra/blas'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/r-base-4.4.1/src/extra/blas'
make[4]: Entering directory '/build/r-base-4.4.1/src/extra/tre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/r-base-4.4.1/src/extra/tre'
make[4]: Entering directory '/build/r-base-4.4.1/src/extra/tzone'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/r-base-4.4.1/src/extra/tzone'
make[4]: Entering directory '/build/r-base-4.4.1/src/extra/xdr'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/r-base-4.4.1/src/extra/xdr'
make[4]: Entering directory '/build/r-base-4.4.1/src/extra/intl'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/build/r-base-4.4.1/src/extra/intl'
make[3]: Leaving directory '/build/r-base-4.4.1/src/extra'
make[3]: Entering directory '/build/r-base-4.4.1/src/appl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/build/r-base-4.4.1/src/appl'
make[3]: Entering directory '/build/r-base-4.4.1/src/nmath'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/build/r-base-4.4.1/src/nmath'
make[3]: Entering directory '/build/r-base-4.4.1/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory '/build/r-base-4.4.1/src/unix'
make[3]: Entering directory '/build/r-base-4.4.1/src/main'
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory '/build/r-base-4.4.1/src/main'
make[4]: Leaving directory '/build/r-base-4.4.1/src/main'
make[4]: Entering directory '/build/r-base-4.4.1/src/main'
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory '/build/r-base-4.4.1/src/main'
make[3]: Leaving directory '/build/r-base-4.4.1/src/main'
make[3]: Entering directory '/build/r-base-4.4.1/src/modules'
make[4]: Entering directory '/build/r-base-4.4.1/src/modules/internet'
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory '/build/r-base-4.4.1/src/modules/internet'
make[4]: Entering directory '/build/r-base-4.4.1/src/modules/lapack'
make[4]: Leaving directory '/build/r-base-4.4.1/src/modules/lapack'
make[4]: Entering directory '/build/r-base-4.4.1/src/modules/X11'
make[4]: Leaving directory '/build/r-base-4.4.1/src/modules/X11'
make[3]: Leaving directory '/build/r-base-4.4.1/src/modules'
make[3]: Entering directory '/build/r-base-4.4.1/src/library'
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/lib/R/library
installing packages ...
  building HTML index ...
make[3]: Leaving directory '/build/r-base-4.4.1/src/library'
make[2]: Leaving directory '/build/r-base-4.4.1/src'
make[2]: Entering directory '/build/r-base-4.4.1/tests'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/build/r-base-4.4.1/tests'
make[1]: Leaving directory '/build/r-base-4.4.1'
(cd src/unix; 						\
	rm -vf Rscript /build/r-base-4.4.1/debian/r-base-core/usr/bin/Rscript;	\
	/usr/bin/make	CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"		\
		CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CXXFLAGS` -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT"	\
		FFLAGS="-g -O2 -fdebug-prefix-map=/build/r-base-4.4.1=. -fstack-protector-strong -D_REENTRANT"	\
		CC=gcc				\
		CXX=g++			\
		F77=gfortran			\
		RHOME=/usr/lib/R			\
		DESTDIR=/build/r-base-4.4.1/debian/r-base-core			\
		install-Rscript )
removed 'Rscript'
removed '/build/r-base-4.4.1/debian/r-base-core/usr/bin/Rscript'
make[1]: Entering directory '/build/r-base-4.4.1/src/unix'
gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fdebug-prefix-map=/build/r-base-4.4.1/src/unix=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
make[1]: Leaving directory '/build/r-base-4.4.1/src/unix'
#ls -ltr /build/r-base-4.4.1/debian/r-base-core/usr/bin/
#strings src/unix/Rscript
cp -vax src/unix/Rscript /build/r-base-4.4.1/debian/r-base-core/usr/bin/
'src/unix/Rscript' -> '/build/r-base-4.4.1/debian/r-base-core/usr/bin/Rscript'
#ls -ltr /build/r-base-4.4.1/debian/r-base-core/usr/bin/
#strings /build/r-base-4.4.1/debian/r-base-core/usr/bin/Rscript
(cd src/nmath/standalone;				\
	/usr/bin/make DESTDIR=/build/r-base-4.4.1/debian/r-base-core install )
make[1]: Entering directory '/build/r-base-4.4.1/src/nmath/standalone'
make[2]: Entering directory '/build/r-base-4.4.1/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/build/r-base-4.4.1/src/include'
/build/r-base-4.4.1/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged
make[1]: Leaving directory '/build/r-base-4.4.1/src/nmath/standalone'
chmod a+x	/build/r-base-4.4.1/debian/r-base-core/usr/share/R/share/sh/echo.sh
rm -v	/build/r-base-4.4.1/debian/r-base-core/usr/lib/R/COPYING
removed '/build/r-base-4.4.1/debian/r-base-core/usr/lib/R/COPYING'
(cd /build/r-base-4.4.1/debian/r-base-core/usr/lib/R/; \
	ln -s ../../share/common-licenses/GPL-2 COPYING)
rm -v	/build/r-base-4.4.1/debian/r-base-core/usr/share/R/doc/COPYING
removed '/build/r-base-4.4.1/debian/r-base-core/usr/share/R/doc/COPYING'
(cd /build/r-base-4.4.1/debian/r-base-core/usr/share/R/doc; \
	ln -s ../../../share/common-licenses/GPL-2 COPYING)
(cd /build/r-base-4.4.1/debian/r-base-core/usr/share/texmf/tex/latex && 	\
    ln -s ../../../R/share/texmf R)
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-html
make		prefix=/build/r-base-4.4.1/debian/r-base-core/usr			\
		rdocdir=/build/r-base-4.4.1/debian/r-base-core/usr/share/R/doc	\
		install-pdf
make[1]: Entering directory '/build/r-base-4.4.1'
make[2]: Entering directory '/build/r-base-4.4.1/doc/manual'
installing R manuals in PDF format ...
make[2]: Leaving directory '/build/r-base-4.4.1/doc/manual'
make[1]: Leaving directory '/build/r-base-4.4.1'
make		prefix=/build/r-base-4.4.1/debian/r-base-core/usr  \
		infodir=/build/r-base-4.4.1/debian/r-base-core/usr/share/info	install-info
make[1]: Entering directory '/build/r-base-4.4.1'
make[2]: Entering directory '/build/r-base-4.4.1/doc/manual'
mkdir -p -- /build/r-base-4.4.1/debian/r-base-core/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/build/r-base-4.4.1/debian/r-base-core/usr/share/info"
installing R info pages ...
updating '/build/r-base-4.4.1/debian/r-base-core/usr/share/info/dir' ...
you need to adjust /build/r-base-4.4.1/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/r-base-4.4.1/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/r-base-4.4.1/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/r-base-4.4.1/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/r-base-4.4.1/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/r-base-4.4.1/debian/r-base-core/usr/share/info/dir manually
you need to adjust /build/r-base-4.4.1/debian/r-base-core/usr/share/info/dir manually
make[2]: Leaving directory '/build/r-base-4.4.1/doc/manual'
make[1]: Leaving directory '/build/r-base-4.4.1'
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-pdf
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
gunzip -9v /build/r-base-4.4.1/debian/r-base-core/usr/share/info/*.gz
/build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-FAQ.info.gz:	 67.5% -- replaced with /build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-FAQ.info
/build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-admin.info.gz:	 68.2% -- replaced with /build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-admin.info
/build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-data.info.gz:	 70.9% -- replaced with /build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-data.info
/build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-exts.info-1.gz:	 66.8% -- replaced with /build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-exts.info-1
/build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-exts.info-2.gz:	 67.9% -- replaced with /build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-exts.info-2
/build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-exts.info-3.gz:	 76.7% -- replaced with /build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-exts.info-3
/build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-exts.info.gz:	 70.7% -- replaced with /build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-exts.info
/build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-intro.info.gz:	 70.4% -- replaced with /build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-intro.info
/build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-ints.info.gz:	 68.7% -- replaced with /build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-ints.info
/build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-lang.info.gz:	 71.9% -- replaced with /build/r-base-4.4.1/debian/r-base-core/usr/share/info/R-lang.info
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-info
rm -vf	/build/r-base-4.4.1/debian/r-doc-info/usr/share/info/dir		\
	/build/r-base-4.4.1/debian/r-doc-info/usr/share/info/dir.old
removed '/build/r-base-4.4.1/debian/r-doc-info/usr/share/info/dir'
touch install-indep-stamp
dh_installdirs -pr-mathlib usr/include usr/lib \
				usr/share/lintian/overrides \
				usr/lib/pkgconfig
dh_movefiles	--sourcedir=debian/r-base-core -pr-mathlib
(cd /build/r-base-4.4.1/debian/r-mathlib/usr/lib; \
		ls -l ; \
		mv -v  libRmath.so 	     libRmath.so.1.0.0; \
		ln -sv libRmath.so.1.0.0 libRmath.so.1; \
		ln -sv libRmath.so.1  libRmath.so)
total 2156
-rw-r--r-- 1 root root 1365470 Jun 14 12:15 libRmath.a
-rwxr-xr-x 1 root root  833416 Jun 14 12:15 libRmath.so
drwxr-xr-x 2 root root    4096 Jun 14 12:15 pkgconfig
renamed 'libRmath.so' -> 'libRmath.so.1.0.0'
'libRmath.so.1' -> 'libRmath.so.1.0.0'
'libRmath.so' -> 'libRmath.so.1'
install -m 0644 src/include/Rmath.h			\
		/build/r-base-4.4.1/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /build/r-base-4.4.1/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /build/r-base-4.4.1/debian/r-base-core/etc/R
(cd /build/r-base-4.4.1/debian/r-base-core/usr/lib/R/etc; \
	mv Makeconf repositories ldpaths ../../../../etc/R/;	\
	mv Renviron Renviron.ucf;				\
	ln -s  /etc/R/Makeconf	.;				\
	ln -s  /etc/R/Renviron	.;				\
	ln -s  /etc/R/Renviron.site .;				\
	ln -s  /etc/R/Rprofile.site .;				\
	ln -s  /etc/R/ldpaths   .;                              \
	ln -s  /etc/R/repositories .				)
dh_bash-completion
# edd 12 Jan 2016  new location
#install -m 0644 debian/R.bash-completion \
#	debian/r-base-core/usr/share/bash-completion/completions/R
(cd /build/r-base-4.4.1/debian/r-base-core/usr/lib/; \
	ln -sv R/lib/libR.so . )
'./libR.so' -> 'R/lib/libR.so'
(cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
rlogo_icon.png (application/octet-stream)
install -m 0644 debian/icon-class-patch/rlogo_icon.png	\
	debian/r-base-core/usr/share/icons/hicolor/48x48/apps
install -m 0644 debian/icon-class-patch/Rlogo.svg	\
	debian/r-base-core/usr/share/icons/hicolor/scalable/apps/rlogo_icon.svg
install -m 0644 debian/icon-class-patch/R.desktop	\
	debian/r-base-core/usr/share/applications
rm debian/icon-class-patch/rlogo_icon.png
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core doc/NEWS.* README \
				debian/README.Atlas \
				debian/README.mathlib
dh_installdocs -pr-mathlib  doc/NEWS.* README \
				debian/README.mathlib
dh_installexamples -pr-mathlib	src/nmath/standalone/test.c
(cd /build/r-base-4.4.1/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /build/r-base-4.4.1/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644  debian/r-base-core.lintian \
   /build/r-base-4.4.1/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644  debian/r-recommended.lintian \
   /build/r-base-4.4.1/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644  debian/r-mathlib.lintian \
   /build/r-base-4.4.1/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
dh_installchangelogs -a	-k doc/NEWS
dh_strip -a
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /build/r-base-4.4.1/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-mathlib/usr/lib/libRmath.so.1.0.0 was not linked against libgomp.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/stats/libs/stats.so debian/r-base-core/usr/lib/R/modules/lapack.so debian/r-base-core/usr/lib/R/lib/libR.so were not linked against libgfortran.so.5 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_X11.so debian/r-base-core/usr/lib/R/library/tcltk/libs/tcltk.so debian/r-base-core/usr/lib/R/modules/R_de.so were not linked against libXext.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_X11.so debian/r-base-core/usr/lib/R/modules/R_de.so were not linked against libICE.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_X11.so debian/r-base-core/usr/lib/R/modules/R_de.so were not linked against libSM.so.6 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/modules/R_X11.so debian/r-base-core/usr/lib/R/library/grDevices/libs/cairo.so debian/r-base-core/usr/lib/R/modules/R_de.so were not linked against libglib-2.0.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/stats/libs/stats.so debian/r-base-core/usr/lib/R/modules/lapack.so debian/r-base-core/usr/lib/R/lib/libR.so were not linked against libquadmath.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-base-core/usr/lib/R/library/tcltk/libs/tcltk.so was not linked against libXss.so.1 (it uses none of the library's symbols)
*** Getting graphics engine version from 'GraphicsEngine.h' header
echo R_GE_version | cpp -I ./src/include/ -include R_ext/GraphicsEngine.h | tail -n1 | sed 's/^/graphicsengine:Version=/' >> debian/r-base-core.substvars
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'r-base-core-dbgsym' in '../r-base-core-dbgsym_4.4.1-1~bustercran.0_i386.deb'.
dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.4.1-1~bustercran.0_i386.deb'.
dpkg-deb: building package 'r-base-core' in '../r-base-core_4.4.1-1~bustercran.0_i386.deb'.
dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_4.4.1-1~bustercran.0_i386.deb'.
*** binary-indep ***
dh_testdir -i
dh_testroot -i
dh_link -i
dh_installdocs -i
dh_installdocs -v -pr-doc-html
	install -p -m0644 debian/copyright debian/r-doc-html/usr/share/doc/r-doc-html/copyright
	install -p -m0644 debian/r-doc-html.doc-base.faq debian/r-doc-html/usr/share/doc-base/r-faq
	install -p -m0644 debian/r-doc-html.doc-base.intro debian/r-doc-html/usr/share/doc-base/r-intro
	install -p -m0644 debian/r-doc-html.doc-base.lang debian/r-doc-html/usr/share/doc-base/r-language
	install -p -m0644 debian/r-doc-html.doc-base.exts debian/r-doc-html/usr/share/doc-base/r-extensions
	install -p -m0644 debian/r-doc-html.doc-base.data debian/r-doc-html/usr/share/doc-base/r-data
	install -p -m0644 debian/r-doc-html.doc-base.ints debian/r-doc-html/usr/share/doc-base/r-ints
	install -p -m0644 debian/r-doc-html.doc-base.admin debian/r-doc-html/usr/share/doc-base/r-admin
dh_installchangelogs -i
dh_installdirs -pr-base-dev usr/share/R/debian
install -p -m 0755  debian/r-cran.mk \
	/build/r-base-4.4.1/debian/r-base-dev/usr/share/R/debian
dh_compress -i
dh_fixperms -i
dh_installdeb -i
dh_gencontrol -i
dh_md5sums -i
dh_builddeb -i
dpkg-deb: building package 'r-base' in '../r-base_4.4.1-1~bustercran.0_all.deb'.
dpkg-deb: building package 'r-base-dev' in '../r-base-dev_4.4.1-1~bustercran.0_all.deb'.
dpkg-deb: building package 'r-doc-info' in '../r-doc-info_4.4.1-1~bustercran.0_all.deb'.
dpkg-deb: building package 'r-recommended' in '../r-recommended_4.4.1-1~bustercran.0_all.deb'.
dpkg-deb: building package 'r-doc-html' in '../r-doc-html_4.4.1-1~bustercran.0_all.deb'.
dpkg-deb: building package 'r-doc-pdf' in '../r-doc-pdf_4.4.1-1~bustercran.0_all.deb'.
dpkg-deb: building package 'r-base-html' in '../r-base-html_4.4.1-1~bustercran.0_all.deb'.
 dpkg-genbuildinfo
 dpkg-genchanges -sa >../r-base_4.4.1-1~bustercran.0_i386.changes
dpkg-genchanges: warning: the current version (4.4.1-1~bustercran.0) is earlier than the previous one (4.4.1-1)
dpkg-genchanges: info: including full source code in upload
 dpkg-source --after-build .
dpkg-buildpackage: info: full upload (original source is included)
dpkg-genchanges: warning: the current version (4.4.1-1~bustercran.0) is earlier than the previous one (4.4.1-1)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: Copying back the cached apt archive contents
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /var/cache/pbuilder/buster-i386/build/24306 and its subdirectories
I: Current time: Fri Jun 14 14:15:31 CEST 2024
I: pbuilder-time-stamp: 1718367331