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prosextract |
% prosextract Builds the PROSITE motif database for patmatmotifs to search Enter name of prosite directory: ../../data/ |
Go to the output files for this example
The output files named after the prosite accession numbers can now also be seen in the prosite directory. This files are automatically created after prosextract is run.
Mandatory qualifiers: [-infdat] string Enter name of prosite directory Optional qualifiers: (none) Advanced qualifiers: (none) Associated qualifiers: (none) General qualifiers: -auto boolean Turn off prompts -stdout boolean Write standard output -filter boolean Read standard input, write standard output -options boolean Prompt for required and optional values -debug boolean Write debug output to program.dbg -acdlog boolean Write ACD processing log to program.acdlog -acdpretty boolean Rewrite ACD file as program.acdpretty -acdtable boolean Write HTML table of options -verbose boolean Report some/full command line options -help boolean Report command line options. More information on associated and general qualifiers can be found with -help -verbose -warning boolean Report warnings -error boolean Report errors -fatal boolean Report fatal errors -die boolean Report deaths |
Mandatory qualifiers | Allowed values | Default | |
---|---|---|---|
[-infdat] (Parameter 1) |
Enter name of prosite directory | Any string is accepted | An empty string is accepted |
Optional qualifiers | Allowed values | Default | |
(none) | |||
Advanced qualifiers | Allowed values | Default | |
(none) |
Program name | Description |
---|---|
aaindexextract | Extract data from AAINDEX |
cutgextract | Extract data from CUTG |
printsextract | Extract data from PRINTS |
rebaseextract | Extract data from REBASE |
tfextract | Extract data from TRANSFAC |