0552257c84a98544970991886afdfb99 *DESCRIPTION
ebc4336ca51790bbe9deca216cb3fdfa *NAMESPACE
124f38e21460d7ff455ebc4acf45031c *NEWS.md
5f0bd28cdc4f28c75e94e75f676af709 *R/dual-continuous.R
3f9813feb989f156bbc9952f90e46e79 *R/dual-discrete.R
e3c12b5fa7f8f9012b0d885fc01f00a8 *R/dual-none.R
973971a1522a7e59db6499e9461fa1a6 *R/nosoiSim.R
132acec958858993e041fcd4c75b2f52 *R/nosoi_sanityChecks-Messages.R
11b698b6922854927ac65e68a781d9a6 *R/nosoi_step1-makeMoves.R
66d815b9c6530674986b3d4576119d95 *R/nosoi_step2-MeetTransmit.R
dd6f7f03bc3c0ad8a192fcf500a559b7 *R/nosoi_tablesManagment.R
74664593ed337dc8ffa6e68b41dcd982 *R/nosoi_utilityFunctions.R
1c54185dc21e787cb7987ce42d0460d7 *R/output_nosoiSummary.R
4abf583478a5830f08db225e52781ac8 *R/output_treeGenerator.r
5b0da015b177f957e35196d2a601ab7a *R/output_utilityFunctions.R
45b89bfecf447e3f7a962c97b6fbfbd9 *R/single-continuous.R
2293aa58da2e2531f0eae7e10f1e9747 *R/single-discrete.R
734198c6b3d8c6242c1e3f7459cb6361 *R/single-none.R
0c224862cd87eb089c22cde8b3d8da52 *build/vignette.rds
c90fa80444eebd91e19e2506816cef7f *inst/CITATION
7dde0e3a6030a263e8142a2cf61eaec4 *inst/WORDLIST
00e25210c9a88b84d8424fcdeb0888d9 *inst/doc/continuous.R
c33fcbe388214d73d031b50eaf7fbda3 *inst/doc/continuous.Rmd
4a96247306a4c79c781f552a08cf724c *inst/doc/continuous.html
0643e7fbfc970de99907982e6ab833fd *inst/doc/discrete.R
0f5b0fd852e79355140f1a018f0fb6cc *inst/doc/discrete.Rmd
086a7039754cc54d96783654f418be9f *inst/doc/discrete.html
d0069715fb8ce789eb4e60aea52d134c *inst/doc/none.R
fc3642eeb27559bd7ad729bc25f2a9da *inst/doc/none.Rmd
7cc87f4423fbaaa15fcca40e2ffa909c *inst/doc/none.html
f7e2131fb29f4dcdf9b77f2daa148791 *inst/doc/nosoi.R
cc57651ac941bd4c8ce2cdd1f32e5cb3 *inst/doc/nosoi.Rmd
2c3197d27f968995851e0c918e236cb0 *inst/doc/nosoi.html
77bb80612c7443a577a3281060aa7408 *inst/doc/output.R
08224a030a17a2d3147b5309da56982f *inst/doc/output.Rmd
b9f71ced253f0a67f4718421702c17a7 *inst/doc/output.html
9bc68b7bf08d58280418ee9aec7da682 *man/CoreSanityChecks.Rd
3cb490a73e7e002c573929befecb08eb *man/FunctionSanityChecks.Rd
1be509d747992fb3a46781dd027802d5 *man/MatrixSanityChecks.Rd
7726a40aad4c250f4023e35b40813ed9 *man/RasterSanityChecks.Rd
6ef6b7fb6afbd1ed0e30448dd9fea568 *man/SingleNone.Rd
132aaf71301c0fa1a3e1d11d2b33e4a1 *man/add_node_tip.Rd
64642cc183ff9f6350c2b89f0b5e87a3 *man/applyFunctionToHosts.Rd
55c6b92bbfd7d03200d55e8e1b85036d *man/cumulativeInfected.Rd
cbfc06e85366ea80bd4a2ed5889b1722 *man/drawBernouilli.Rd
2d527693ada25fd52dbf5c078ea90e4d *man/dualContinuous.Rd
7f906a646ba599866c902d39c2374217 *man/dualDiscrete.Rd
e6547cc9098336539b145c8c69fb1a1f *man/dualNone.Rd
f0c1f19f8dc4903542c88597fc19c4ef *man/endMessage.Rd
f71fba2a242bb6d4bda8b1d615287e19 *man/figures/logo.png
4f4217c0b333ed584e1e94d36a410cd1 *man/getCumulative.Rd
32722a17ef5cc7ed0cc91498cff0d1c5 *man/getDynamic.Rd
6f88f9bd6f7139810ac21003d141c9bc *man/getExitingMoving.Rd
302c57a08dfbdc4c6c6e90934f695a64 *man/getHostData.Rd
558292c601a48c5cf7978658a2b2ff9a *man/getPositionInfected.Rd
1addb214d2c0f1d735be0765c9fa45dc *man/getR0.Rd
ddc27c9caec3f600e05d08f1d0d22097 *man/getTableHosts.Rd
eb15cef16a3a6cbd767715975d2bb4eb *man/getTableState.Rd
a546002e4cddf8d9de3b0ff97711681b *man/getTransmissionTree.Rd
bea5931e744df539cd0c24707e81014b *man/get_node.Rd
ad06582545718a89b90213fc519a13f1 *man/get_other_count.Rd
e2a5712ae881865f076be0f75314971a *man/get_position.Rd
387546049da2a78ee1848e546fd94e17 *man/get_state.Rd
e0db69e0375b5b450229d2343bdce560 *man/iniTable.Rd
3ebcd121c800a39c6461c6de2389099b *man/iniTableState.Rd
1bfcf15cd9b296289c9c8c299befe19d *man/keep.tip.treedata.Rd
171e24ae2b098cf9d7cc60bff43e9e1a *man/keepState.Rd
a657ff77c3fca7a86dfc172330e9eb45 *man/makeMoves.Rd
b78f38a13cb76eb36d83f43aa40cfa6c *man/meetTransmit.Rd
1cf99374f0e207d90e2d4bda45173e77 *man/merge_host_tables.Rd
cee7c8469fe7272e0666610d834b53b6 *man/moveFunction.continuous.Rd
f5972baaad9405f630b188a348db2430 *man/moveFunction.discrete.Rd
be093e592342092c8b298d6de27ed305 *man/moveRotateContinuous.Rd
6453b21128e533d4a356cc915efcfb17 *man/newLine.Rd
effd07dac3c4e711a8bcb9964d4de5aa *man/newLineState.Rd
1b3ee14545551aa19d8f3939911573b5 *man/nosoiSim.Rd
b52c2a651e9c675ac06215856a62d6c4 *man/nosoiSimConstructor.Rd
62b3a89056cd8279b6dfaf86f38aa8da *man/nosoiSimOneConstructor.Rd
f2f265c008fc4dc19dbee0f63671287d *man/nosoiSummary.Rd
733931654a21a39f41cfa43c2585cbf6 *man/numberInfected.Rd
30d93b9e226280e7645670ba68e290f8 *man/numberInfectedBGW.Rd
15a6776090379bb06c6373e71d04b58f *man/numberInfectedStates.Rd
424117fde917249f67167daf287208ed *man/paramConstructor.Rd
e0eb25837ee27e61825f73816a9a3791 *man/parseFunction.Rd
2a0453efd85920e0fe5b692a27f96b0e *man/progressMessage.Rd
71d17d2828ad60c7b6b15e910653e924 *man/sampleTransmissionTree.Rd
0f45430ba840d04caaba060d66e2e173 *man/sampleTransmissionTreeFromExiting.Rd
c3f6dd11b35d084a57b9d1f30dc9dbb9 *man/singleContinuous.Rd
323d7b05e9f4a570305dc9da9f0f8f00 *man/singleDiscrete.Rd
2fd03c7de81bf4273509232a44e5a74c *man/updateHostCount.Rd
52e4da52f56a6a8741c7ecbdae70af63 *man/updateTableState.Rd
8a36f5131e15de84283c09b81a9ebddf *man/writeInfected.Rd
77a64eafc86612aedc9414b5d6a5ce06 *tests/testthat.R
1cd1d67f59081b0c06a32d4ac8abe7f4 *tests/testthat/testDualContinuous.R
7468b89c0b2902dfb91b0e31d84033f2 *tests/testthat/testDualDiscrete.R
62d57f384a25facdc494b2f53824f54a *tests/testthat/testDualNone.R
e6b440be73f2f4dc8f004daddb2d58cb *tests/testthat/testErrors.R
9445608911d47f09e3b25caba06c2f3b *tests/testthat/testParsing.R
936b6d46844e438f117206b94df4e0a2 *tests/testthat/testSingleContinuous.R
91f8481af907d237c15568a34d503b05 *tests/testthat/testSingleDiscrete.R
28bc180edb89c2a3fe810a6f558a3b14 *tests/testthat/testSingleNone.R
eaf26f1309af114ca0d70a31118b486b *tests/testthat/testTransmissionTree.R
c33fcbe388214d73d031b50eaf7fbda3 *vignettes/continuous.Rmd
0f5b0fd852e79355140f1a018f0fb6cc *vignettes/discrete.Rmd
fc3642eeb27559bd7ad729bc25f2a9da *vignettes/none.Rmd
cc57651ac941bd4c8ce2cdd1f32e5cb3 *vignettes/nosoi.Rmd
08224a030a17a2d3147b5309da56982f *vignettes/output.Rmd
